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MYLK and CALD1 as molecular targets in bladder cancer
Bladder cancer (BC) is a malignant tumor that occurs in bladder mucosa. However, relationship between myosin light chain kinase (MYLK) and CALD1 and BC remains unclear. The BC datasets GSE65635 and GSE100926 were downloaded from gene expression omnibus by GPL14951 and GPL14550. Multiple datasets wer...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Lippincott Williams & Wilkins
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10681608/ https://www.ncbi.nlm.nih.gov/pubmed/38013282 http://dx.doi.org/10.1097/MD.0000000000036302 |
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author | Jin, Hui Liu, Bin Guo, Xin Qiao, Xi Jiao, Wenpeng Yang, Liman Song, Xiaosen Wei, Yueyue Jin, Tingting |
author_facet | Jin, Hui Liu, Bin Guo, Xin Qiao, Xi Jiao, Wenpeng Yang, Liman Song, Xiaosen Wei, Yueyue Jin, Tingting |
author_sort | Jin, Hui |
collection | PubMed |
description | Bladder cancer (BC) is a malignant tumor that occurs in bladder mucosa. However, relationship between myosin light chain kinase (MYLK) and CALD1 and BC remains unclear. The BC datasets GSE65635 and GSE100926 were downloaded from gene expression omnibus by GPL14951 and GPL14550. Multiple datasets were merged and batched. Differentially expressed genes (DEGs) were screened and weighted gene co-expression network analysis was performed. gene ontology (GO) and Kyoto Encyclopedia of Gene and Genome analysis, gene set enrichment analysis, immune infiltration analysis, survival analysis and Comparative Toxicogenomics Database were performed. TargetScan screened miRNAs that regulated central DEGs. 1026 DEGs were identified. According to GO analysis, DEGs were mainly enriched in cancer pathway, cGMP-PKG signaling pathway, Apelin signaling pathway and proteoglycans in cancer. The enrichment items are similar to GO and Kyoto Encyclopedia of Gene and Genome enrichment projects for DEGs, which were mainly enriched in cancer pathways and leukocyte trans-endothelial cell migration. Among enrichment projects of metascape, GO has regulation of the enzyme-linked receptor protein signaling pathway and silk-based process, as well as an enrichment network stained by enrichment terms and P values. Nine core genes (ACTA2, MYLK, MYH11, MYL9, ACTG2, TPM1, TPM2, TAGLN and CALD1) were obtained, which were highly expressed in tumor tissue samples and lowly expressed in normal tissue samples. Nine genes were associated with necrosis, inflammation, tumor, edema, and ureteral obstruction. MYLK and CALD1 are highly expressed in the BC. The higher expression of MYLK and CALD1, the worse prognosis. |
format | Online Article Text |
id | pubmed-10681608 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Lippincott Williams & Wilkins |
record_format | MEDLINE/PubMed |
spelling | pubmed-106816082023-11-24 MYLK and CALD1 as molecular targets in bladder cancer Jin, Hui Liu, Bin Guo, Xin Qiao, Xi Jiao, Wenpeng Yang, Liman Song, Xiaosen Wei, Yueyue Jin, Tingting Medicine (Baltimore) 5700 Bladder cancer (BC) is a malignant tumor that occurs in bladder mucosa. However, relationship between myosin light chain kinase (MYLK) and CALD1 and BC remains unclear. The BC datasets GSE65635 and GSE100926 were downloaded from gene expression omnibus by GPL14951 and GPL14550. Multiple datasets were merged and batched. Differentially expressed genes (DEGs) were screened and weighted gene co-expression network analysis was performed. gene ontology (GO) and Kyoto Encyclopedia of Gene and Genome analysis, gene set enrichment analysis, immune infiltration analysis, survival analysis and Comparative Toxicogenomics Database were performed. TargetScan screened miRNAs that regulated central DEGs. 1026 DEGs were identified. According to GO analysis, DEGs were mainly enriched in cancer pathway, cGMP-PKG signaling pathway, Apelin signaling pathway and proteoglycans in cancer. The enrichment items are similar to GO and Kyoto Encyclopedia of Gene and Genome enrichment projects for DEGs, which were mainly enriched in cancer pathways and leukocyte trans-endothelial cell migration. Among enrichment projects of metascape, GO has regulation of the enzyme-linked receptor protein signaling pathway and silk-based process, as well as an enrichment network stained by enrichment terms and P values. Nine core genes (ACTA2, MYLK, MYH11, MYL9, ACTG2, TPM1, TPM2, TAGLN and CALD1) were obtained, which were highly expressed in tumor tissue samples and lowly expressed in normal tissue samples. Nine genes were associated with necrosis, inflammation, tumor, edema, and ureteral obstruction. MYLK and CALD1 are highly expressed in the BC. The higher expression of MYLK and CALD1, the worse prognosis. Lippincott Williams & Wilkins 2023-11-24 /pmc/articles/PMC10681608/ /pubmed/38013282 http://dx.doi.org/10.1097/MD.0000000000036302 Text en Copyright © 2023 the Author(s). Published by Wolters Kluwer Health, Inc. https://creativecommons.org/licenses/by-nc/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution-Non Commercial License 4.0 (CCBY-NC) (https://creativecommons.org/licenses/by-nc/4.0/) , where it is permissible to download, share, remix, transform, and buildup the work provided it is properly cited. The work cannot be used commercially without permission from the journal. |
spellingShingle | 5700 Jin, Hui Liu, Bin Guo, Xin Qiao, Xi Jiao, Wenpeng Yang, Liman Song, Xiaosen Wei, Yueyue Jin, Tingting MYLK and CALD1 as molecular targets in bladder cancer |
title | MYLK and CALD1 as molecular targets in bladder cancer |
title_full | MYLK and CALD1 as molecular targets in bladder cancer |
title_fullStr | MYLK and CALD1 as molecular targets in bladder cancer |
title_full_unstemmed | MYLK and CALD1 as molecular targets in bladder cancer |
title_short | MYLK and CALD1 as molecular targets in bladder cancer |
title_sort | mylk and cald1 as molecular targets in bladder cancer |
topic | 5700 |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10681608/ https://www.ncbi.nlm.nih.gov/pubmed/38013282 http://dx.doi.org/10.1097/MD.0000000000036302 |
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