Cargando…

GENI: A web server to identify gene set enrichments in tumor samples

The Cancer Genome Atlas (TCGA) and analogous projects have yielded invaluable tumor-associated genomic data. Despite several web-based platforms designed to enhance accessibility, certain analyses require prior bioinformatic expertise. To address this need, we developed Gene ENrichment Identifier (G...

Descripción completa

Detalles Bibliográficos
Autores principales:	Hayashi, Arata, Ruppo, Shmuel, Heilbrun, Elisheva E., Mazzoni, Chiara, Adar, Sheera, Yassour, Moran, Rmaileh, Areej Abu, Shaul, Yoav D.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Research Network of Computational and Structural Biotechnology 2023
Materias:	Software/Web Server Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10681878/ https://www.ncbi.nlm.nih.gov/pubmed/38034403 http://dx.doi.org/10.1016/j.csbj.2023.10.053

Ejemplares similares

LibGENiE – A bioinformatic pipeline for the design of information-enriched enzyme libraries
por: Patsch, David, et al.
Publicado: (2023)

WebFARM: web server for finite automated restriction mapping
por: Singh, Tiratha Raj
Publicado: (2010)

LipidSuite: interactive web server for lipidomics differential and enrichment analysis
por: Mohamed, Ahmed, et al.
Publicado: (2021)

IWS: Integrated web server for protein sequence and structure analysis
por: Shameer, Khader, et al.
Publicado: (2007)

A web server for transcription factor binding site prediction
por: Su, Gang, et al.
Publicado: (2006)

ESBRI: A web server for evaluating salt bridges in proteins
por: Costantini, Susan, et al.
Publicado: (2008)

RICHEST ‐ a web server for richness estimation in biological data
por: Durden, Chris, et al.
Publicado: (2009)

FUNAGE-Pro: comprehensive web server for gene set enrichment analysis of prokaryotes
por: de Jong, Anne, et al.
Publicado: (2022)

LSAT: Liliaceae Simple Sequences Analysis Tool, a web server
por: Biswas, Manosh Kumar, et al.
Publicado: (2018)

JUZBOX: A web server for extracting biomedical words from the protein sequence
por: Bobby, Paul, et al.
Publicado: (2009)

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update
por: Kuleshov, Maxim V., et al.
Publicado: (2016)

LOLAweb: a containerized web server for interactive genomic locus overlap enrichment analysis
por: Nagraj, V P, et al.
Publicado: (2018)

LIPPRED: A web server for accurate prediction of lipoprotein signal sequences and cleavage sites
por: Taylor, Paul D, et al.
Publicado: (2006)

The microarray manual curation tool (MMCT): A Web server for microarray probe evaluations
por: Tulpan, Dan, et al.
Publicado: (2010)

CFP: a webserver for constructing sequencebased protein conformational flexibility profiles
por: Kuznetsov, Igor B, et al.
Publicado: (2009)

FlexPred: a web-server for predicting residue positions involved in conformational switches in proteins
por: Kuznetsov, Igor B, et al.
Publicado: (2008)

PIMA: Protein-Protein interactions in Macromolecular Assembly - a web server for its Analysis and Visualization
por: Kaleeckal Mathew, Oommen, et al.
Publicado: (2016)

Ori-Finder 2022: A Comprehensive Web Server for Prediction and Analysis of Bacterial Replication Origins
por: Dong, Mei-Jing, et al.
Publicado: (2022)

ScanMoment: a web server for combinatorial analysis of basic residues in nucleic acid binding sites
por: Massey, Steven E
Publicado: (2009)

g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)
por: Raudvere, Uku, et al.
Publicado: (2019)

PICI: A web server with a multi-parametric algorithm for identifying interaction sites within protein complexes
por: Das, Arindam Atanu, et al.
Publicado: (2016)

FAIR: A server for internal sequence repeats
por: Senthilkumar, Ramaswamy, et al.
Publicado: (2010)

APPRIS WebServer and WebServices
por: Rodriguez, Jose Manuel, et al.
Publicado: (2015)

Cistrome-GO: a web server for functional enrichment analysis of transcription factor ChIP-seq peaks
por: Li, Shaojuan, et al.
Publicado: (2019)

IHGA: An interactive web server for large-scale and comprehensive discovery of genes of interest in hepatocellular carcinoma
por: Zhang, Qiangnu, et al.
Publicado: (2023)

T-Epitope Designer: A HLA-peptide binding prediction server
por: Kangueane, Pandjassarame, et al.
Publicado: (2005)

Genonets server—a web server for the construction, analysis and visualization of genotype networks
por: Khalid, Fahad, et al.
Publicado: (2016)

GraPES: The Granule Protein Enrichment Server for prediction of biological condensate constituents
por: Kuechler, Erich R, et al.
Publicado: (2022)

HMMER web server: 2015 update
por: Finn, Robert D., et al.
Publicado: (2015)

HMMER web server: 2018 update
por: Potter, Simon C, et al.
Publicado: (2018)

IMOPAC: A web server for interactive multiomics and pharmacological analyses of patient-derived cancer cell lines
por: Li, Ganxun, et al.
Publicado: (2023)

PSSweb: protein structural statistics web server
por: Gaillard, Thomas, et al.
Publicado: (2016)

Amino Acid Interaction (INTAA) web server
por: Galgonek, Jakub, et al.
Publicado: (2017)

PockDrug-Server: a new web server for predicting pocket druggability on holo and apo proteins
por: Hussein, Hiba Abi, et al.
Publicado: (2015)

webSDA: a web server to simulate macromolecular diffusional association
por: Yu, Xiaofeng, et al.
Publicado: (2015)

Web-Beagle: a web server for the alignment of RNA secondary structures
por: Mattei, Eugenio, et al.
Publicado: (2015)

CSAR-web: a web server of contig scaffolding using algebraic rearrangements
por: Chen, Kun-Tze, et al.
Publicado: (2018)

PrankWeb: a web server for ligand binding site prediction and visualization
por: Jendele, Lukas, et al.
Publicado: (2019)

NPDock: a web server for protein–nucleic acid docking
por: Tuszynska, Irina, et al.
Publicado: (2015)

CCTOP: a Consensus Constrained TOPology prediction web server
por: Dobson, László, et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_m8m9h01t9chj64r6v3fqbnu74j