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NAxtra magnetic nanoparticles for low-cost, efficient isolation of mammalian DNA and RNA

A cost-effective, viral nucleic acid (NA) isolation kit based on NAxtra magnetic nanoparticles was developed at the Norwegian University of Science and Technology in response to the shortage of commercial kits for isolation of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) RNA during t...

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Autores principales: Starheim, Eirin Johannessen, Ravlo, Erlend, Schjølberg, Jørn-Ove, Solvang, Vanessa, Wang, Wei, Scrimgeour, Nathan Robert, Manaf, Adeel, Erlandsen, Sten Even, Aas, Per Arne, Hagen, Lars, de Sousa, Mirta Mittelstedt Leal, Bjørås, Magnar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10682382/
https://www.ncbi.nlm.nih.gov/pubmed/38012172
http://dx.doi.org/10.1038/s41598-023-46868-5
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author Starheim, Eirin Johannessen
Ravlo, Erlend
Schjølberg, Jørn-Ove
Solvang, Vanessa
Wang, Wei
Scrimgeour, Nathan Robert
Manaf, Adeel
Erlandsen, Sten Even
Aas, Per Arne
Hagen, Lars
de Sousa, Mirta Mittelstedt Leal
Bjørås, Magnar
author_facet Starheim, Eirin Johannessen
Ravlo, Erlend
Schjølberg, Jørn-Ove
Solvang, Vanessa
Wang, Wei
Scrimgeour, Nathan Robert
Manaf, Adeel
Erlandsen, Sten Even
Aas, Per Arne
Hagen, Lars
de Sousa, Mirta Mittelstedt Leal
Bjørås, Magnar
author_sort Starheim, Eirin Johannessen
collection PubMed
description A cost-effective, viral nucleic acid (NA) isolation kit based on NAxtra magnetic nanoparticles was developed at the Norwegian University of Science and Technology in response to the shortage of commercial kits for isolation of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) RNA during the coronavirus disease 2019 (COVID-19) pandemic. This method showed comparable sensitivity to available kits at significantly reduced cost, making its application for other biological sources an intriguing prospect. Thus, based on this low-cost nucleic acid extraction technology, we developed a simple, low- and high-throughput, efficient method for isolation of high-integrity total NA, DNA and RNA from mammalian cell lines (monolayer) and organoids (3D-cultures). The extracted NA are compatible with downstream applications including (RT-)qPCR and next-generation sequencing. When automated, NA isolation can be performed in 14 min for up to 96 samples, yielding similar quantities to available kits.
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spelling pubmed-106823822023-11-30 NAxtra magnetic nanoparticles for low-cost, efficient isolation of mammalian DNA and RNA Starheim, Eirin Johannessen Ravlo, Erlend Schjølberg, Jørn-Ove Solvang, Vanessa Wang, Wei Scrimgeour, Nathan Robert Manaf, Adeel Erlandsen, Sten Even Aas, Per Arne Hagen, Lars de Sousa, Mirta Mittelstedt Leal Bjørås, Magnar Sci Rep Article A cost-effective, viral nucleic acid (NA) isolation kit based on NAxtra magnetic nanoparticles was developed at the Norwegian University of Science and Technology in response to the shortage of commercial kits for isolation of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) RNA during the coronavirus disease 2019 (COVID-19) pandemic. This method showed comparable sensitivity to available kits at significantly reduced cost, making its application for other biological sources an intriguing prospect. Thus, based on this low-cost nucleic acid extraction technology, we developed a simple, low- and high-throughput, efficient method for isolation of high-integrity total NA, DNA and RNA from mammalian cell lines (monolayer) and organoids (3D-cultures). The extracted NA are compatible with downstream applications including (RT-)qPCR and next-generation sequencing. When automated, NA isolation can be performed in 14 min for up to 96 samples, yielding similar quantities to available kits. Nature Publishing Group UK 2023-11-27 /pmc/articles/PMC10682382/ /pubmed/38012172 http://dx.doi.org/10.1038/s41598-023-46868-5 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Starheim, Eirin Johannessen
Ravlo, Erlend
Schjølberg, Jørn-Ove
Solvang, Vanessa
Wang, Wei
Scrimgeour, Nathan Robert
Manaf, Adeel
Erlandsen, Sten Even
Aas, Per Arne
Hagen, Lars
de Sousa, Mirta Mittelstedt Leal
Bjørås, Magnar
NAxtra magnetic nanoparticles for low-cost, efficient isolation of mammalian DNA and RNA
title NAxtra magnetic nanoparticles for low-cost, efficient isolation of mammalian DNA and RNA
title_full NAxtra magnetic nanoparticles for low-cost, efficient isolation of mammalian DNA and RNA
title_fullStr NAxtra magnetic nanoparticles for low-cost, efficient isolation of mammalian DNA and RNA
title_full_unstemmed NAxtra magnetic nanoparticles for low-cost, efficient isolation of mammalian DNA and RNA
title_short NAxtra magnetic nanoparticles for low-cost, efficient isolation of mammalian DNA and RNA
title_sort naxtra magnetic nanoparticles for low-cost, efficient isolation of mammalian dna and rna
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10682382/
https://www.ncbi.nlm.nih.gov/pubmed/38012172
http://dx.doi.org/10.1038/s41598-023-46868-5
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