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Deep learning parametric response mapping from inspiratory chest CT scans: a new approach for small airway disease screening
OBJECTIVES: Parametric response mapping (PRM) enables the evaluation of small airway disease (SAD) at the voxel level, but requires both inspiratory and expiratory chest CT scans. We hypothesize that deep learning PRM from inspiratory chest CT scans can effectively evaluate SAD in individuals with n...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10683250/ https://www.ncbi.nlm.nih.gov/pubmed/38017476 http://dx.doi.org/10.1186/s12931-023-02611-2 |
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author | Chen, Bin Liu, Ziyi Lu, Jinjuan Li, Zhihao Kuang, Kaiming Yang, Jiancheng Wang, Zengmao Sun, Yingli Du, Bo Qi, Lin Li, Ming |
author_facet | Chen, Bin Liu, Ziyi Lu, Jinjuan Li, Zhihao Kuang, Kaiming Yang, Jiancheng Wang, Zengmao Sun, Yingli Du, Bo Qi, Lin Li, Ming |
author_sort | Chen, Bin |
collection | PubMed |
description | OBJECTIVES: Parametric response mapping (PRM) enables the evaluation of small airway disease (SAD) at the voxel level, but requires both inspiratory and expiratory chest CT scans. We hypothesize that deep learning PRM from inspiratory chest CT scans can effectively evaluate SAD in individuals with normal spirometry. METHODS: We included 537 participants with normal spirometry, a history of smoking or secondhand smoke exposure, and divided them into training, tuning, and test sets. A cascaded generative adversarial network generated expiratory CT from inspiratory CT, followed by a UNet-like network predicting PRM using real inspiratory CT and generated expiratory CT. The performance of the prediction is evaluated using SSIM, RMSE and dice coefficients. Pearson correlation evaluated the correlation between predicted and ground truth PRM. ROC curves evaluated predicted PRM(fSAD) (the volume percentage of functional small airway disease, fSAD) performance in stratifying SAD. RESULTS: Our method can generate expiratory CT of good quality (SSIM 0.86, RMSE 80.13 HU). The predicted PRM dice coefficients for normal lung, emphysema, and fSAD regions are 0.85, 0.63, and 0.51, respectively. The volume percentages of emphysema and fSAD showed good correlation between predicted and ground truth PRM (|r| were 0.97 and 0.64, respectively, p < 0.05). Predicted PRM(fSAD) showed good SAD stratification performance with ground truth PRM(fSAD) at thresholds of 15%, 20% and 25% (AUCs were 0.84, 0.78, and 0.84, respectively, p < 0.001). CONCLUSION: Our deep learning method generates high-quality PRM using inspiratory chest CT and effectively stratifies SAD in individuals with normal spirometry. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12931-023-02611-2. |
format | Online Article Text |
id | pubmed-10683250 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-106832502023-11-30 Deep learning parametric response mapping from inspiratory chest CT scans: a new approach for small airway disease screening Chen, Bin Liu, Ziyi Lu, Jinjuan Li, Zhihao Kuang, Kaiming Yang, Jiancheng Wang, Zengmao Sun, Yingli Du, Bo Qi, Lin Li, Ming Respir Res Research OBJECTIVES: Parametric response mapping (PRM) enables the evaluation of small airway disease (SAD) at the voxel level, but requires both inspiratory and expiratory chest CT scans. We hypothesize that deep learning PRM from inspiratory chest CT scans can effectively evaluate SAD in individuals with normal spirometry. METHODS: We included 537 participants with normal spirometry, a history of smoking or secondhand smoke exposure, and divided them into training, tuning, and test sets. A cascaded generative adversarial network generated expiratory CT from inspiratory CT, followed by a UNet-like network predicting PRM using real inspiratory CT and generated expiratory CT. The performance of the prediction is evaluated using SSIM, RMSE and dice coefficients. Pearson correlation evaluated the correlation between predicted and ground truth PRM. ROC curves evaluated predicted PRM(fSAD) (the volume percentage of functional small airway disease, fSAD) performance in stratifying SAD. RESULTS: Our method can generate expiratory CT of good quality (SSIM 0.86, RMSE 80.13 HU). The predicted PRM dice coefficients for normal lung, emphysema, and fSAD regions are 0.85, 0.63, and 0.51, respectively. The volume percentages of emphysema and fSAD showed good correlation between predicted and ground truth PRM (|r| were 0.97 and 0.64, respectively, p < 0.05). Predicted PRM(fSAD) showed good SAD stratification performance with ground truth PRM(fSAD) at thresholds of 15%, 20% and 25% (AUCs were 0.84, 0.78, and 0.84, respectively, p < 0.001). CONCLUSION: Our deep learning method generates high-quality PRM using inspiratory chest CT and effectively stratifies SAD in individuals with normal spirometry. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12931-023-02611-2. BioMed Central 2023-11-28 2023 /pmc/articles/PMC10683250/ /pubmed/38017476 http://dx.doi.org/10.1186/s12931-023-02611-2 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Chen, Bin Liu, Ziyi Lu, Jinjuan Li, Zhihao Kuang, Kaiming Yang, Jiancheng Wang, Zengmao Sun, Yingli Du, Bo Qi, Lin Li, Ming Deep learning parametric response mapping from inspiratory chest CT scans: a new approach for small airway disease screening |
title | Deep learning parametric response mapping from inspiratory chest CT scans: a new approach for small airway disease screening |
title_full | Deep learning parametric response mapping from inspiratory chest CT scans: a new approach for small airway disease screening |
title_fullStr | Deep learning parametric response mapping from inspiratory chest CT scans: a new approach for small airway disease screening |
title_full_unstemmed | Deep learning parametric response mapping from inspiratory chest CT scans: a new approach for small airway disease screening |
title_short | Deep learning parametric response mapping from inspiratory chest CT scans: a new approach for small airway disease screening |
title_sort | deep learning parametric response mapping from inspiratory chest ct scans: a new approach for small airway disease screening |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10683250/ https://www.ncbi.nlm.nih.gov/pubmed/38017476 http://dx.doi.org/10.1186/s12931-023-02611-2 |
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