Cargando…
The Potential of a CT-Based Machine Learning Radiomics Analysis to Differentiate Brucella and Pyogenic Spondylitis
BACKGROUND: Pyogenic spondylitis (PS) and Brucella spondylitis (BS) are common spinal infections with similar manifestations, making their differentiation challenging. This study aimed to explore the potential of CT-based radiomics features combined with machine learning algorithms to differentiate...
Autores principales: | , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Dove
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10683663/ https://www.ncbi.nlm.nih.gov/pubmed/38034044 http://dx.doi.org/10.2147/JIR.S429593 |
_version_ | 1785151245917356032 |
---|---|
author | Yasin, Parhat Mardan, Muradil Abliz, Dilxat Xu, Tao Keyoumu, Nuerbiyan Aimaiti, Abasi Cai, Xiaoyu Sheng, Weibin Mamat, Mardan |
author_facet | Yasin, Parhat Mardan, Muradil Abliz, Dilxat Xu, Tao Keyoumu, Nuerbiyan Aimaiti, Abasi Cai, Xiaoyu Sheng, Weibin Mamat, Mardan |
author_sort | Yasin, Parhat |
collection | PubMed |
description | BACKGROUND: Pyogenic spondylitis (PS) and Brucella spondylitis (BS) are common spinal infections with similar manifestations, making their differentiation challenging. This study aimed to explore the potential of CT-based radiomics features combined with machine learning algorithms to differentiate PS from BS. METHODS: This retrospective study involved the collection of clinical and radiological information from 138 patients diagnosed with either PS or BS in our hospital between January 2017 and December 2022, based on histopathology examination and/or germ isolations. The region of interest (ROI) was defined by two radiologists using a 3D Slicer open-source platform, utilizing blind analysis of sagittal CT images against histopathological examination results. PyRadiomics, a Python package, was utilized to extract ROI features. Several methods were performed to reduce the dimensionality of the extracted features. Machine learning algorithms were trained and evaluated using techniques like the area under the receiver operating characteristic curve (AUC; confusion matrix-related metrics, calibration plot, and decision curve analysis to assess their ability to differentiate PS from BS. Additionally, permutation feature importance (PFI; local interpretable model-agnostic explanations (LIME; and Shapley additive explanation (SHAP) techniques were utilized to gain insights into the interpretabilities of the models that are otherwise considered opaque black-boxes. RESULTS: A total of 15 radiomics features were screened during the analysis. The AUC value and Brier score of best the model were 0.88 and 0.13, respectively. The calibration plot and decision curve analysis displayed higher clinical efficiency in the differential diagnosis. According to the interpretation results, the most impactful features on the model output were wavelet LHL small dependence low gray-level emphasis (GLDN). CONCLUSION: The CT-based radiomics models that we developed have proven to be useful in reliably differentiating between PS and BS at an early stage and can provide a reliable explanation for the classification results. |
format | Online Article Text |
id | pubmed-10683663 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Dove |
record_format | MEDLINE/PubMed |
spelling | pubmed-106836632023-11-30 The Potential of a CT-Based Machine Learning Radiomics Analysis to Differentiate Brucella and Pyogenic Spondylitis Yasin, Parhat Mardan, Muradil Abliz, Dilxat Xu, Tao Keyoumu, Nuerbiyan Aimaiti, Abasi Cai, Xiaoyu Sheng, Weibin Mamat, Mardan J Inflamm Res Original Research BACKGROUND: Pyogenic spondylitis (PS) and Brucella spondylitis (BS) are common spinal infections with similar manifestations, making their differentiation challenging. This study aimed to explore the potential of CT-based radiomics features combined with machine learning algorithms to differentiate PS from BS. METHODS: This retrospective study involved the collection of clinical and radiological information from 138 patients diagnosed with either PS or BS in our hospital between January 2017 and December 2022, based on histopathology examination and/or germ isolations. The region of interest (ROI) was defined by two radiologists using a 3D Slicer open-source platform, utilizing blind analysis of sagittal CT images against histopathological examination results. PyRadiomics, a Python package, was utilized to extract ROI features. Several methods were performed to reduce the dimensionality of the extracted features. Machine learning algorithms were trained and evaluated using techniques like the area under the receiver operating characteristic curve (AUC; confusion matrix-related metrics, calibration plot, and decision curve analysis to assess their ability to differentiate PS from BS. Additionally, permutation feature importance (PFI; local interpretable model-agnostic explanations (LIME; and Shapley additive explanation (SHAP) techniques were utilized to gain insights into the interpretabilities of the models that are otherwise considered opaque black-boxes. RESULTS: A total of 15 radiomics features were screened during the analysis. The AUC value and Brier score of best the model were 0.88 and 0.13, respectively. The calibration plot and decision curve analysis displayed higher clinical efficiency in the differential diagnosis. According to the interpretation results, the most impactful features on the model output were wavelet LHL small dependence low gray-level emphasis (GLDN). CONCLUSION: The CT-based radiomics models that we developed have proven to be useful in reliably differentiating between PS and BS at an early stage and can provide a reliable explanation for the classification results. Dove 2023-11-24 /pmc/articles/PMC10683663/ /pubmed/38034044 http://dx.doi.org/10.2147/JIR.S429593 Text en © 2023 Yasin et al. https://creativecommons.org/licenses/by-nc/3.0/This work is published and licensed by Dove Medical Press Limited. The full terms of this license are available at https://www.dovepress.com/terms.php and incorporate the Creative Commons Attribution – Non Commercial (unported, v3.0) License (http://creativecommons.org/licenses/by-nc/3.0/ (https://creativecommons.org/licenses/by-nc/3.0/) ). By accessing the work you hereby accept the Terms. Non-commercial uses of the work are permitted without any further permission from Dove Medical Press Limited, provided the work is properly attributed. For permission for commercial use of this work, please see paragraphs 4.2 and 5 of our Terms (https://www.dovepress.com/terms.php). |
spellingShingle | Original Research Yasin, Parhat Mardan, Muradil Abliz, Dilxat Xu, Tao Keyoumu, Nuerbiyan Aimaiti, Abasi Cai, Xiaoyu Sheng, Weibin Mamat, Mardan The Potential of a CT-Based Machine Learning Radiomics Analysis to Differentiate Brucella and Pyogenic Spondylitis |
title | The Potential of a CT-Based Machine Learning Radiomics Analysis to Differentiate Brucella and Pyogenic Spondylitis |
title_full | The Potential of a CT-Based Machine Learning Radiomics Analysis to Differentiate Brucella and Pyogenic Spondylitis |
title_fullStr | The Potential of a CT-Based Machine Learning Radiomics Analysis to Differentiate Brucella and Pyogenic Spondylitis |
title_full_unstemmed | The Potential of a CT-Based Machine Learning Radiomics Analysis to Differentiate Brucella and Pyogenic Spondylitis |
title_short | The Potential of a CT-Based Machine Learning Radiomics Analysis to Differentiate Brucella and Pyogenic Spondylitis |
title_sort | potential of a ct-based machine learning radiomics analysis to differentiate brucella and pyogenic spondylitis |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10683663/ https://www.ncbi.nlm.nih.gov/pubmed/38034044 http://dx.doi.org/10.2147/JIR.S429593 |
work_keys_str_mv | AT yasinparhat thepotentialofactbasedmachinelearningradiomicsanalysistodifferentiatebrucellaandpyogenicspondylitis AT mardanmuradil thepotentialofactbasedmachinelearningradiomicsanalysistodifferentiatebrucellaandpyogenicspondylitis AT ablizdilxat thepotentialofactbasedmachinelearningradiomicsanalysistodifferentiatebrucellaandpyogenicspondylitis AT xutao thepotentialofactbasedmachinelearningradiomicsanalysistodifferentiatebrucellaandpyogenicspondylitis AT keyoumunuerbiyan thepotentialofactbasedmachinelearningradiomicsanalysistodifferentiatebrucellaandpyogenicspondylitis AT aimaitiabasi thepotentialofactbasedmachinelearningradiomicsanalysistodifferentiatebrucellaandpyogenicspondylitis AT caixiaoyu thepotentialofactbasedmachinelearningradiomicsanalysistodifferentiatebrucellaandpyogenicspondylitis AT shengweibin thepotentialofactbasedmachinelearningradiomicsanalysistodifferentiatebrucellaandpyogenicspondylitis AT mamatmardan thepotentialofactbasedmachinelearningradiomicsanalysistodifferentiatebrucellaandpyogenicspondylitis AT yasinparhat potentialofactbasedmachinelearningradiomicsanalysistodifferentiatebrucellaandpyogenicspondylitis AT mardanmuradil potentialofactbasedmachinelearningradiomicsanalysistodifferentiatebrucellaandpyogenicspondylitis AT ablizdilxat potentialofactbasedmachinelearningradiomicsanalysistodifferentiatebrucellaandpyogenicspondylitis AT xutao potentialofactbasedmachinelearningradiomicsanalysistodifferentiatebrucellaandpyogenicspondylitis AT keyoumunuerbiyan potentialofactbasedmachinelearningradiomicsanalysistodifferentiatebrucellaandpyogenicspondylitis AT aimaitiabasi potentialofactbasedmachinelearningradiomicsanalysistodifferentiatebrucellaandpyogenicspondylitis AT caixiaoyu potentialofactbasedmachinelearningradiomicsanalysistodifferentiatebrucellaandpyogenicspondylitis AT shengweibin potentialofactbasedmachinelearningradiomicsanalysistodifferentiatebrucellaandpyogenicspondylitis AT mamatmardan potentialofactbasedmachinelearningradiomicsanalysistodifferentiatebrucellaandpyogenicspondylitis |