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Genome-wide identification of bZIP gene family and expression analysis of BhbZIP58 under heat stress in wax gourd
BACKGROUND: The basic leucine zipper (bZIP) transcription factor family is one of the most abundant and evolutionarily conserved gene families in plants. It assumes crucial functions in the life cycle of plants, including pathogen defense, secondary metabolism, stress response, seed maturation, and...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10685590/ https://www.ncbi.nlm.nih.gov/pubmed/38017380 http://dx.doi.org/10.1186/s12870-023-04580-6 |
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author | Liu, Wei Wang, Min Zhong, Min Luo, Chen Shi, Shaoqi Qian, Yulei Kang, Yunyan Jiang, Biao |
author_facet | Liu, Wei Wang, Min Zhong, Min Luo, Chen Shi, Shaoqi Qian, Yulei Kang, Yunyan Jiang, Biao |
author_sort | Liu, Wei |
collection | PubMed |
description | BACKGROUND: The basic leucine zipper (bZIP) transcription factor family is one of the most abundant and evolutionarily conserved gene families in plants. It assumes crucial functions in the life cycle of plants, including pathogen defense, secondary metabolism, stress response, seed maturation, and flower development. Although the genome of wax gourd has been published, little is known about the functions, evolutionary background, and gene expression patterns of the bZIP gene family, which limits its utilization. RESULTS: A total of 61 bZIP genes (BhbZIPs) were identified from wax gourd (Benincasa hispida) genome and divided into 12 subgroups. Whole-genome duplication (WGD) and dispersed duplication (DSD) were the main driving forces of bZIP gene family expansion in wax gourd, and this family may have undergone intense purifying selection pressure during the evolutionary process. We selected BhbZIP58, only one in the member of subgroup B, to study its expression patterns under different stresses, including heat, salt, drought, cold stress, and ABA treatment. Surprisingly, BhbZIP58 had a dramatic response under heat stress. BhbZIP58 showed the highest expression level in the root compared with leaves, stem, stamen, pistil, and ovary. In addition, BhbZIP58 protein was located in the nucleus and had transcriptional activation activity. Overexpression of BhbZIP58 in Arabidopsis enhanced their heat tolerance. CONCLUSIONS: In this study, bZIP gene family is systematically bioinformatically in wax gourd for the first time. Particularly, BhbZIP58 may have an important role in heat stress. It will facilitate further research on the bZIP gene family regarding their evolutionary history and biological functions. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12870-023-04580-6. |
format | Online Article Text |
id | pubmed-10685590 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-106855902023-11-30 Genome-wide identification of bZIP gene family and expression analysis of BhbZIP58 under heat stress in wax gourd Liu, Wei Wang, Min Zhong, Min Luo, Chen Shi, Shaoqi Qian, Yulei Kang, Yunyan Jiang, Biao BMC Plant Biol Research BACKGROUND: The basic leucine zipper (bZIP) transcription factor family is one of the most abundant and evolutionarily conserved gene families in plants. It assumes crucial functions in the life cycle of plants, including pathogen defense, secondary metabolism, stress response, seed maturation, and flower development. Although the genome of wax gourd has been published, little is known about the functions, evolutionary background, and gene expression patterns of the bZIP gene family, which limits its utilization. RESULTS: A total of 61 bZIP genes (BhbZIPs) were identified from wax gourd (Benincasa hispida) genome and divided into 12 subgroups. Whole-genome duplication (WGD) and dispersed duplication (DSD) were the main driving forces of bZIP gene family expansion in wax gourd, and this family may have undergone intense purifying selection pressure during the evolutionary process. We selected BhbZIP58, only one in the member of subgroup B, to study its expression patterns under different stresses, including heat, salt, drought, cold stress, and ABA treatment. Surprisingly, BhbZIP58 had a dramatic response under heat stress. BhbZIP58 showed the highest expression level in the root compared with leaves, stem, stamen, pistil, and ovary. In addition, BhbZIP58 protein was located in the nucleus and had transcriptional activation activity. Overexpression of BhbZIP58 in Arabidopsis enhanced their heat tolerance. CONCLUSIONS: In this study, bZIP gene family is systematically bioinformatically in wax gourd for the first time. Particularly, BhbZIP58 may have an important role in heat stress. It will facilitate further research on the bZIP gene family regarding their evolutionary history and biological functions. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12870-023-04580-6. BioMed Central 2023-11-29 /pmc/articles/PMC10685590/ /pubmed/38017380 http://dx.doi.org/10.1186/s12870-023-04580-6 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Liu, Wei Wang, Min Zhong, Min Luo, Chen Shi, Shaoqi Qian, Yulei Kang, Yunyan Jiang, Biao Genome-wide identification of bZIP gene family and expression analysis of BhbZIP58 under heat stress in wax gourd |
title | Genome-wide identification of bZIP gene family and expression analysis of BhbZIP58 under heat stress in wax gourd |
title_full | Genome-wide identification of bZIP gene family and expression analysis of BhbZIP58 under heat stress in wax gourd |
title_fullStr | Genome-wide identification of bZIP gene family and expression analysis of BhbZIP58 under heat stress in wax gourd |
title_full_unstemmed | Genome-wide identification of bZIP gene family and expression analysis of BhbZIP58 under heat stress in wax gourd |
title_short | Genome-wide identification of bZIP gene family and expression analysis of BhbZIP58 under heat stress in wax gourd |
title_sort | genome-wide identification of bzip gene family and expression analysis of bhbzip58 under heat stress in wax gourd |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10685590/ https://www.ncbi.nlm.nih.gov/pubmed/38017380 http://dx.doi.org/10.1186/s12870-023-04580-6 |
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