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SAKE: Strobemer-assisted k-mer extraction

K-mer-based analysis plays an important role in many bioinformatics applications, such as de novo assembly, sequencing error correction, and genotyping. To take full advantage of such methods, the k-mer content of a read set must be captured as accurately as possible. Often the use of long k-mers is...

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Detalles Bibliográficos
Autores principales: Leinonen, Miika, Salmela, Leena
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10686461/
https://www.ncbi.nlm.nih.gov/pubmed/38019768
http://dx.doi.org/10.1371/journal.pone.0294415