Cargando…

A dynamic and collaborative database for morphogeometric information of trilobites

Modern morphometric-based approaches provide valuable metrics to quantify and understand macroevolutionary and macroecological patterns and processes. Here we describe TriloMorph, an openly accessible database for morpho-geometric information of trilobites, together with a landmark acquisition proto...

Descripción completa

Detalles Bibliográficos
Autores principales: Serra, Fernanda, Balseiro, Diego, Monnet, Claude, Randolfe, Enrique, Bignon, Arnaud, Rustán, Juan J., Bault, Valentin, Muñoz, Diego F., Vaccari, N. Emilio, Martinetto, Malena, Crônier, Catherine, Waisfeld, Beatriz G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10687081/
https://www.ncbi.nlm.nih.gov/pubmed/38030629
http://dx.doi.org/10.1038/s41597-023-02724-9
_version_ 1785151904085442560
author Serra, Fernanda
Balseiro, Diego
Monnet, Claude
Randolfe, Enrique
Bignon, Arnaud
Rustán, Juan J.
Bault, Valentin
Muñoz, Diego F.
Vaccari, N. Emilio
Martinetto, Malena
Crônier, Catherine
Waisfeld, Beatriz G.
author_facet Serra, Fernanda
Balseiro, Diego
Monnet, Claude
Randolfe, Enrique
Bignon, Arnaud
Rustán, Juan J.
Bault, Valentin
Muñoz, Diego F.
Vaccari, N. Emilio
Martinetto, Malena
Crônier, Catherine
Waisfeld, Beatriz G.
author_sort Serra, Fernanda
collection PubMed
description Modern morphometric-based approaches provide valuable metrics to quantify and understand macroevolutionary and macroecological patterns and processes. Here we describe TriloMorph, an openly accessible database for morpho-geometric information of trilobites, together with a landmark acquisition protocol. In addition to morphological traits, the database contains contextual data on chronostratigraphic age, geographic location, taxonomic information and lithology of landmarked specimens. In this first version, the dataset has broad taxonomic and temporal coverage and comprises more than 55% of all trilobite genera and 85% of families recorded in the Paleobiology Database through the Devonian. We provide a release of geometric morphometric data of 277 specimens linked to published references. Additionally, we established a Github repository for constant input of morphometric data by multiple contributors and present R functions that help with data retrieval and analysis. This is the first attempt of an online, dynamic and collaborative morphometric repository. By bringing this information into a single open database we enhance the possibility of performing global palaeobiological research, providing a major complement to current occurrence-based databases.
format Online
Article
Text
id pubmed-10687081
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-106870812023-11-30 A dynamic and collaborative database for morphogeometric information of trilobites Serra, Fernanda Balseiro, Diego Monnet, Claude Randolfe, Enrique Bignon, Arnaud Rustán, Juan J. Bault, Valentin Muñoz, Diego F. Vaccari, N. Emilio Martinetto, Malena Crônier, Catherine Waisfeld, Beatriz G. Sci Data Data Descriptor Modern morphometric-based approaches provide valuable metrics to quantify and understand macroevolutionary and macroecological patterns and processes. Here we describe TriloMorph, an openly accessible database for morpho-geometric information of trilobites, together with a landmark acquisition protocol. In addition to morphological traits, the database contains contextual data on chronostratigraphic age, geographic location, taxonomic information and lithology of landmarked specimens. In this first version, the dataset has broad taxonomic and temporal coverage and comprises more than 55% of all trilobite genera and 85% of families recorded in the Paleobiology Database through the Devonian. We provide a release of geometric morphometric data of 277 specimens linked to published references. Additionally, we established a Github repository for constant input of morphometric data by multiple contributors and present R functions that help with data retrieval and analysis. This is the first attempt of an online, dynamic and collaborative morphometric repository. By bringing this information into a single open database we enhance the possibility of performing global palaeobiological research, providing a major complement to current occurrence-based databases. Nature Publishing Group UK 2023-11-29 /pmc/articles/PMC10687081/ /pubmed/38030629 http://dx.doi.org/10.1038/s41597-023-02724-9 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Data Descriptor
Serra, Fernanda
Balseiro, Diego
Monnet, Claude
Randolfe, Enrique
Bignon, Arnaud
Rustán, Juan J.
Bault, Valentin
Muñoz, Diego F.
Vaccari, N. Emilio
Martinetto, Malena
Crônier, Catherine
Waisfeld, Beatriz G.
A dynamic and collaborative database for morphogeometric information of trilobites
title A dynamic and collaborative database for morphogeometric information of trilobites
title_full A dynamic and collaborative database for morphogeometric information of trilobites
title_fullStr A dynamic and collaborative database for morphogeometric information of trilobites
title_full_unstemmed A dynamic and collaborative database for morphogeometric information of trilobites
title_short A dynamic and collaborative database for morphogeometric information of trilobites
title_sort dynamic and collaborative database for morphogeometric information of trilobites
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10687081/
https://www.ncbi.nlm.nih.gov/pubmed/38030629
http://dx.doi.org/10.1038/s41597-023-02724-9
work_keys_str_mv AT serrafernanda adynamicandcollaborativedatabaseformorphogeometricinformationoftrilobites
AT balseirodiego adynamicandcollaborativedatabaseformorphogeometricinformationoftrilobites
AT monnetclaude adynamicandcollaborativedatabaseformorphogeometricinformationoftrilobites
AT randolfeenrique adynamicandcollaborativedatabaseformorphogeometricinformationoftrilobites
AT bignonarnaud adynamicandcollaborativedatabaseformorphogeometricinformationoftrilobites
AT rustanjuanj adynamicandcollaborativedatabaseformorphogeometricinformationoftrilobites
AT baultvalentin adynamicandcollaborativedatabaseformorphogeometricinformationoftrilobites
AT munozdiegof adynamicandcollaborativedatabaseformorphogeometricinformationoftrilobites
AT vaccarinemilio adynamicandcollaborativedatabaseformorphogeometricinformationoftrilobites
AT martinettomalena adynamicandcollaborativedatabaseformorphogeometricinformationoftrilobites
AT croniercatherine adynamicandcollaborativedatabaseformorphogeometricinformationoftrilobites
AT waisfeldbeatrizg adynamicandcollaborativedatabaseformorphogeometricinformationoftrilobites
AT serrafernanda dynamicandcollaborativedatabaseformorphogeometricinformationoftrilobites
AT balseirodiego dynamicandcollaborativedatabaseformorphogeometricinformationoftrilobites
AT monnetclaude dynamicandcollaborativedatabaseformorphogeometricinformationoftrilobites
AT randolfeenrique dynamicandcollaborativedatabaseformorphogeometricinformationoftrilobites
AT bignonarnaud dynamicandcollaborativedatabaseformorphogeometricinformationoftrilobites
AT rustanjuanj dynamicandcollaborativedatabaseformorphogeometricinformationoftrilobites
AT baultvalentin dynamicandcollaborativedatabaseformorphogeometricinformationoftrilobites
AT munozdiegof dynamicandcollaborativedatabaseformorphogeometricinformationoftrilobites
AT vaccarinemilio dynamicandcollaborativedatabaseformorphogeometricinformationoftrilobites
AT martinettomalena dynamicandcollaborativedatabaseformorphogeometricinformationoftrilobites
AT croniercatherine dynamicandcollaborativedatabaseformorphogeometricinformationoftrilobites
AT waisfeldbeatrizg dynamicandcollaborativedatabaseformorphogeometricinformationoftrilobites