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Paramagnetic NMR to study iron sulfur proteins: (13)C detected experiments illuminate the vicinity of the metal center

The robustness of NMR coherence transfer in proximity of a paramagnetic center depends on the relaxation properties of the nuclei involved. In the case of Iron-Sulfur Proteins, different pulse schemes or different parameter sets often provide complementary results. Tailored versions of HCACO and CAC...

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Autores principales: Querci, Leonardo, Grifagni, Deborah, Trindade, Inês B., Silva, José Malanho, Louro, Ricardo O., Cantini, Francesca, Piccioli, Mario
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Netherlands 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10687126/
https://www.ncbi.nlm.nih.gov/pubmed/37853207
http://dx.doi.org/10.1007/s10858-023-00425-4
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author Querci, Leonardo
Grifagni, Deborah
Trindade, Inês B.
Silva, José Malanho
Louro, Ricardo O.
Cantini, Francesca
Piccioli, Mario
author_facet Querci, Leonardo
Grifagni, Deborah
Trindade, Inês B.
Silva, José Malanho
Louro, Ricardo O.
Cantini, Francesca
Piccioli, Mario
author_sort Querci, Leonardo
collection PubMed
description The robustness of NMR coherence transfer in proximity of a paramagnetic center depends on the relaxation properties of the nuclei involved. In the case of Iron-Sulfur Proteins, different pulse schemes or different parameter sets often provide complementary results. Tailored versions of HCACO and CACO experiments significantly increase the number of observed C(α)/C’ connectivities in highly paramagnetic systems, by recovering many resonances that were lost due to paramagnetic relaxation. Optimized (13)C direct detected experiments can significantly extend the available assignments, improving the overall knowledge of these systems. The different relaxation properties of C(α) and C’ nuclei are exploited in CACO vs COCA experiments and the complementarity of the two experiments is used to obtain structural information. The two [Fe(2)S(2)](+) clusters containing NEET protein CISD3 and the one [Fe(4)S(4)](2+) cluster containing HiPIP protein PioC have been taken as model systems. We show that tailored experiments contribute to decrease the blind sphere around the cluster, to extend resonance assignment of cluster bound cysteine residues and to retrieve details on the topology of the iron-bound ligand residues. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s10858-023-00425-4.
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spelling pubmed-106871262023-12-01 Paramagnetic NMR to study iron sulfur proteins: (13)C detected experiments illuminate the vicinity of the metal center Querci, Leonardo Grifagni, Deborah Trindade, Inês B. Silva, José Malanho Louro, Ricardo O. Cantini, Francesca Piccioli, Mario J Biomol NMR Article The robustness of NMR coherence transfer in proximity of a paramagnetic center depends on the relaxation properties of the nuclei involved. In the case of Iron-Sulfur Proteins, different pulse schemes or different parameter sets often provide complementary results. Tailored versions of HCACO and CACO experiments significantly increase the number of observed C(α)/C’ connectivities in highly paramagnetic systems, by recovering many resonances that were lost due to paramagnetic relaxation. Optimized (13)C direct detected experiments can significantly extend the available assignments, improving the overall knowledge of these systems. The different relaxation properties of C(α) and C’ nuclei are exploited in CACO vs COCA experiments and the complementarity of the two experiments is used to obtain structural information. The two [Fe(2)S(2)](+) clusters containing NEET protein CISD3 and the one [Fe(4)S(4)](2+) cluster containing HiPIP protein PioC have been taken as model systems. We show that tailored experiments contribute to decrease the blind sphere around the cluster, to extend resonance assignment of cluster bound cysteine residues and to retrieve details on the topology of the iron-bound ligand residues. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s10858-023-00425-4. Springer Netherlands 2023-10-18 2023 /pmc/articles/PMC10687126/ /pubmed/37853207 http://dx.doi.org/10.1007/s10858-023-00425-4 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Querci, Leonardo
Grifagni, Deborah
Trindade, Inês B.
Silva, José Malanho
Louro, Ricardo O.
Cantini, Francesca
Piccioli, Mario
Paramagnetic NMR to study iron sulfur proteins: (13)C detected experiments illuminate the vicinity of the metal center
title Paramagnetic NMR to study iron sulfur proteins: (13)C detected experiments illuminate the vicinity of the metal center
title_full Paramagnetic NMR to study iron sulfur proteins: (13)C detected experiments illuminate the vicinity of the metal center
title_fullStr Paramagnetic NMR to study iron sulfur proteins: (13)C detected experiments illuminate the vicinity of the metal center
title_full_unstemmed Paramagnetic NMR to study iron sulfur proteins: (13)C detected experiments illuminate the vicinity of the metal center
title_short Paramagnetic NMR to study iron sulfur proteins: (13)C detected experiments illuminate the vicinity of the metal center
title_sort paramagnetic nmr to study iron sulfur proteins: (13)c detected experiments illuminate the vicinity of the metal center
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10687126/
https://www.ncbi.nlm.nih.gov/pubmed/37853207
http://dx.doi.org/10.1007/s10858-023-00425-4
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