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STAR: A Web Server for Assisting Directed Protein Evolution with Machine Learning
[Image: see text] Protein engineering has made significant contributions to industries such as agriculture, food, and pharmaceuticals. In recent years, directed evolution combined with artificial intelligence has emerged as a cutting-edge R&D approach. However, the application of machine learnin...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10688154/ https://www.ncbi.nlm.nih.gov/pubmed/38046324 http://dx.doi.org/10.1021/acsomega.3c04832 |
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author | Yang, Likun Liang, Xiaoli Zhang, Na Lu, Lu |
author_facet | Yang, Likun Liang, Xiaoli Zhang, Na Lu, Lu |
author_sort | Yang, Likun |
collection | PubMed |
description | [Image: see text] Protein engineering has made significant contributions to industries such as agriculture, food, and pharmaceuticals. In recent years, directed evolution combined with artificial intelligence has emerged as a cutting-edge R&D approach. However, the application of machine learning techniques can be challenging for those without relevant experience and coding skills. To address this issue, we have developed a web-based protein sequence recommendation system: STAR (Sequence recommendaTion via ARtificial intelligence). Our system utilizes Bayesian optimization as its backbone and includes a filtering step using a regression model to enhance the success rate of recommended sequences. Additionally, we have incorporated an in silico-directed evolution approach to expand the exploration of the protein space. The Web site can be accessed at https://www.FindProteinStar.com/. |
format | Online Article Text |
id | pubmed-10688154 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-106881542023-12-01 STAR: A Web Server for Assisting Directed Protein Evolution with Machine Learning Yang, Likun Liang, Xiaoli Zhang, Na Lu, Lu ACS Omega [Image: see text] Protein engineering has made significant contributions to industries such as agriculture, food, and pharmaceuticals. In recent years, directed evolution combined with artificial intelligence has emerged as a cutting-edge R&D approach. However, the application of machine learning techniques can be challenging for those without relevant experience and coding skills. To address this issue, we have developed a web-based protein sequence recommendation system: STAR (Sequence recommendaTion via ARtificial intelligence). Our system utilizes Bayesian optimization as its backbone and includes a filtering step using a regression model to enhance the success rate of recommended sequences. Additionally, we have incorporated an in silico-directed evolution approach to expand the exploration of the protein space. The Web site can be accessed at https://www.FindProteinStar.com/. American Chemical Society 2023-11-14 /pmc/articles/PMC10688154/ /pubmed/38046324 http://dx.doi.org/10.1021/acsomega.3c04832 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Yang, Likun Liang, Xiaoli Zhang, Na Lu, Lu STAR: A Web Server for Assisting Directed Protein Evolution with Machine Learning |
title | STAR: A Web Server for Assisting Directed Protein
Evolution with Machine Learning |
title_full | STAR: A Web Server for Assisting Directed Protein
Evolution with Machine Learning |
title_fullStr | STAR: A Web Server for Assisting Directed Protein
Evolution with Machine Learning |
title_full_unstemmed | STAR: A Web Server for Assisting Directed Protein
Evolution with Machine Learning |
title_short | STAR: A Web Server for Assisting Directed Protein
Evolution with Machine Learning |
title_sort | star: a web server for assisting directed protein
evolution with machine learning |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10688154/ https://www.ncbi.nlm.nih.gov/pubmed/38046324 http://dx.doi.org/10.1021/acsomega.3c04832 |
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