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Data-driven distillation and precision prognosis in traumatic brain injury with interpretable machine learning

Traumatic brain injury (TBI) affects how the brain functions in the short and long term. Resulting patient outcomes across physical, cognitive, and psychological domains are complex and often difficult to predict. Major challenges to developing personalized treatment for TBI include distilling large...

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Autores principales: Tritt, Andrew, Yue, John K., Ferguson, Adam R., Torres Espin, Abel, Nelson, Lindsay D., Yuh, Esther L., Markowitz, Amy J., Manley, Geoffrey T., Bouchard, Kristofer E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10692236/
https://www.ncbi.nlm.nih.gov/pubmed/38040784
http://dx.doi.org/10.1038/s41598-023-48054-z
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author Tritt, Andrew
Yue, John K.
Ferguson, Adam R.
Torres Espin, Abel
Nelson, Lindsay D.
Yuh, Esther L.
Markowitz, Amy J.
Manley, Geoffrey T.
Bouchard, Kristofer E.
author_facet Tritt, Andrew
Yue, John K.
Ferguson, Adam R.
Torres Espin, Abel
Nelson, Lindsay D.
Yuh, Esther L.
Markowitz, Amy J.
Manley, Geoffrey T.
Bouchard, Kristofer E.
author_sort Tritt, Andrew
collection PubMed
description Traumatic brain injury (TBI) affects how the brain functions in the short and long term. Resulting patient outcomes across physical, cognitive, and psychological domains are complex and often difficult to predict. Major challenges to developing personalized treatment for TBI include distilling large quantities of complex data and increasing the precision with which patient outcome prediction (prognoses) can be rendered. We developed and applied interpretable machine learning methods to TBI patient data. We show that complex data describing TBI patients' intake characteristics and outcome phenotypes can be distilled to smaller sets of clinically interpretable latent factors. We demonstrate that 19 clusters of TBI outcomes can be predicted from intake data, a ~ 6× improvement in precision over clinical standards. Finally, we show that 36% of the outcome variance across patients can be predicted. These results demonstrate the importance of interpretable machine learning applied to deeply characterized patients for data-driven distillation and precision prognosis.
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spelling pubmed-106922362023-12-03 Data-driven distillation and precision prognosis in traumatic brain injury with interpretable machine learning Tritt, Andrew Yue, John K. Ferguson, Adam R. Torres Espin, Abel Nelson, Lindsay D. Yuh, Esther L. Markowitz, Amy J. Manley, Geoffrey T. Bouchard, Kristofer E. Sci Rep Article Traumatic brain injury (TBI) affects how the brain functions in the short and long term. Resulting patient outcomes across physical, cognitive, and psychological domains are complex and often difficult to predict. Major challenges to developing personalized treatment for TBI include distilling large quantities of complex data and increasing the precision with which patient outcome prediction (prognoses) can be rendered. We developed and applied interpretable machine learning methods to TBI patient data. We show that complex data describing TBI patients' intake characteristics and outcome phenotypes can be distilled to smaller sets of clinically interpretable latent factors. We demonstrate that 19 clusters of TBI outcomes can be predicted from intake data, a ~ 6× improvement in precision over clinical standards. Finally, we show that 36% of the outcome variance across patients can be predicted. These results demonstrate the importance of interpretable machine learning applied to deeply characterized patients for data-driven distillation and precision prognosis. Nature Publishing Group UK 2023-12-01 /pmc/articles/PMC10692236/ /pubmed/38040784 http://dx.doi.org/10.1038/s41598-023-48054-z Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Tritt, Andrew
Yue, John K.
Ferguson, Adam R.
Torres Espin, Abel
Nelson, Lindsay D.
Yuh, Esther L.
Markowitz, Amy J.
Manley, Geoffrey T.
Bouchard, Kristofer E.
Data-driven distillation and precision prognosis in traumatic brain injury with interpretable machine learning
title Data-driven distillation and precision prognosis in traumatic brain injury with interpretable machine learning
title_full Data-driven distillation and precision prognosis in traumatic brain injury with interpretable machine learning
title_fullStr Data-driven distillation and precision prognosis in traumatic brain injury with interpretable machine learning
title_full_unstemmed Data-driven distillation and precision prognosis in traumatic brain injury with interpretable machine learning
title_short Data-driven distillation and precision prognosis in traumatic brain injury with interpretable machine learning
title_sort data-driven distillation and precision prognosis in traumatic brain injury with interpretable machine learning
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10692236/
https://www.ncbi.nlm.nih.gov/pubmed/38040784
http://dx.doi.org/10.1038/s41598-023-48054-z
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