Cargando…
Data-driven distillation and precision prognosis in traumatic brain injury with interpretable machine learning
Traumatic brain injury (TBI) affects how the brain functions in the short and long term. Resulting patient outcomes across physical, cognitive, and psychological domains are complex and often difficult to predict. Major challenges to developing personalized treatment for TBI include distilling large...
Autores principales: | , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10692236/ https://www.ncbi.nlm.nih.gov/pubmed/38040784 http://dx.doi.org/10.1038/s41598-023-48054-z |
_version_ | 1785152900173922304 |
---|---|
author | Tritt, Andrew Yue, John K. Ferguson, Adam R. Torres Espin, Abel Nelson, Lindsay D. Yuh, Esther L. Markowitz, Amy J. Manley, Geoffrey T. Bouchard, Kristofer E. |
author_facet | Tritt, Andrew Yue, John K. Ferguson, Adam R. Torres Espin, Abel Nelson, Lindsay D. Yuh, Esther L. Markowitz, Amy J. Manley, Geoffrey T. Bouchard, Kristofer E. |
author_sort | Tritt, Andrew |
collection | PubMed |
description | Traumatic brain injury (TBI) affects how the brain functions in the short and long term. Resulting patient outcomes across physical, cognitive, and psychological domains are complex and often difficult to predict. Major challenges to developing personalized treatment for TBI include distilling large quantities of complex data and increasing the precision with which patient outcome prediction (prognoses) can be rendered. We developed and applied interpretable machine learning methods to TBI patient data. We show that complex data describing TBI patients' intake characteristics and outcome phenotypes can be distilled to smaller sets of clinically interpretable latent factors. We demonstrate that 19 clusters of TBI outcomes can be predicted from intake data, a ~ 6× improvement in precision over clinical standards. Finally, we show that 36% of the outcome variance across patients can be predicted. These results demonstrate the importance of interpretable machine learning applied to deeply characterized patients for data-driven distillation and precision prognosis. |
format | Online Article Text |
id | pubmed-10692236 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-106922362023-12-03 Data-driven distillation and precision prognosis in traumatic brain injury with interpretable machine learning Tritt, Andrew Yue, John K. Ferguson, Adam R. Torres Espin, Abel Nelson, Lindsay D. Yuh, Esther L. Markowitz, Amy J. Manley, Geoffrey T. Bouchard, Kristofer E. Sci Rep Article Traumatic brain injury (TBI) affects how the brain functions in the short and long term. Resulting patient outcomes across physical, cognitive, and psychological domains are complex and often difficult to predict. Major challenges to developing personalized treatment for TBI include distilling large quantities of complex data and increasing the precision with which patient outcome prediction (prognoses) can be rendered. We developed and applied interpretable machine learning methods to TBI patient data. We show that complex data describing TBI patients' intake characteristics and outcome phenotypes can be distilled to smaller sets of clinically interpretable latent factors. We demonstrate that 19 clusters of TBI outcomes can be predicted from intake data, a ~ 6× improvement in precision over clinical standards. Finally, we show that 36% of the outcome variance across patients can be predicted. These results demonstrate the importance of interpretable machine learning applied to deeply characterized patients for data-driven distillation and precision prognosis. Nature Publishing Group UK 2023-12-01 /pmc/articles/PMC10692236/ /pubmed/38040784 http://dx.doi.org/10.1038/s41598-023-48054-z Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Tritt, Andrew Yue, John K. Ferguson, Adam R. Torres Espin, Abel Nelson, Lindsay D. Yuh, Esther L. Markowitz, Amy J. Manley, Geoffrey T. Bouchard, Kristofer E. Data-driven distillation and precision prognosis in traumatic brain injury with interpretable machine learning |
title | Data-driven distillation and precision prognosis in traumatic brain injury with interpretable machine learning |
title_full | Data-driven distillation and precision prognosis in traumatic brain injury with interpretable machine learning |
title_fullStr | Data-driven distillation and precision prognosis in traumatic brain injury with interpretable machine learning |
title_full_unstemmed | Data-driven distillation and precision prognosis in traumatic brain injury with interpretable machine learning |
title_short | Data-driven distillation and precision prognosis in traumatic brain injury with interpretable machine learning |
title_sort | data-driven distillation and precision prognosis in traumatic brain injury with interpretable machine learning |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10692236/ https://www.ncbi.nlm.nih.gov/pubmed/38040784 http://dx.doi.org/10.1038/s41598-023-48054-z |
work_keys_str_mv | AT trittandrew datadrivendistillationandprecisionprognosisintraumaticbraininjurywithinterpretablemachinelearning AT yuejohnk datadrivendistillationandprecisionprognosisintraumaticbraininjurywithinterpretablemachinelearning AT fergusonadamr datadrivendistillationandprecisionprognosisintraumaticbraininjurywithinterpretablemachinelearning AT torresespinabel datadrivendistillationandprecisionprognosisintraumaticbraininjurywithinterpretablemachinelearning AT nelsonlindsayd datadrivendistillationandprecisionprognosisintraumaticbraininjurywithinterpretablemachinelearning AT yuhestherl datadrivendistillationandprecisionprognosisintraumaticbraininjurywithinterpretablemachinelearning AT markowitzamyj datadrivendistillationandprecisionprognosisintraumaticbraininjurywithinterpretablemachinelearning AT manleygeoffreyt datadrivendistillationandprecisionprognosisintraumaticbraininjurywithinterpretablemachinelearning AT bouchardkristofere datadrivendistillationandprecisionprognosisintraumaticbraininjurywithinterpretablemachinelearning AT datadrivendistillationandprecisionprognosisintraumaticbraininjurywithinterpretablemachinelearning |