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Experimental evidence that network topology can accelerate the spread of beneficial mutations

Whether and how the spatial arrangement of a population influences adaptive evolution has puzzled evolutionary biologists. Theoretical models make conflicting predictions about the probability that a beneficial mutation will become fixed in a population for certain topologies like stars, in which “l...

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Autores principales: Chakraborty, Partha Pratim, Nemzer, Louis R, Kassen, Rees
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10693003/
https://www.ncbi.nlm.nih.gov/pubmed/38045727
http://dx.doi.org/10.1093/evlett/qrad047
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author Chakraborty, Partha Pratim
Nemzer, Louis R
Kassen, Rees
author_facet Chakraborty, Partha Pratim
Nemzer, Louis R
Kassen, Rees
author_sort Chakraborty, Partha Pratim
collection PubMed
description Whether and how the spatial arrangement of a population influences adaptive evolution has puzzled evolutionary biologists. Theoretical models make conflicting predictions about the probability that a beneficial mutation will become fixed in a population for certain topologies like stars, in which “leaf” populations are connected through a central “hub.” To date, these predictions have not been evaluated under realistic experimental conditions. Here, we test the prediction that topology can change the dynamics of fixation both in vitro and in silico by tracking the frequency of a beneficial mutant under positive selection as it spreads through networks of different topologies. Our results provide empirical support that meta-population topology can increase the likelihood that a beneficial mutation spreads, broaden the conditions under which this phenomenon is thought to occur, and points the way toward using network topology to amplify the effects of weakly favored mutations under directed evolution in industrial applications.
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spelling pubmed-106930032023-12-03 Experimental evidence that network topology can accelerate the spread of beneficial mutations Chakraborty, Partha Pratim Nemzer, Louis R Kassen, Rees Evol Lett Letters Whether and how the spatial arrangement of a population influences adaptive evolution has puzzled evolutionary biologists. Theoretical models make conflicting predictions about the probability that a beneficial mutation will become fixed in a population for certain topologies like stars, in which “leaf” populations are connected through a central “hub.” To date, these predictions have not been evaluated under realistic experimental conditions. Here, we test the prediction that topology can change the dynamics of fixation both in vitro and in silico by tracking the frequency of a beneficial mutant under positive selection as it spreads through networks of different topologies. Our results provide empirical support that meta-population topology can increase the likelihood that a beneficial mutation spreads, broaden the conditions under which this phenomenon is thought to occur, and points the way toward using network topology to amplify the effects of weakly favored mutations under directed evolution in industrial applications. Oxford University Press 2023-10-11 /pmc/articles/PMC10693003/ /pubmed/38045727 http://dx.doi.org/10.1093/evlett/qrad047 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of The Society for the Study of Evolution (SSE) and European Society for Evolutionary Biology (ESEN). https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Letters
Chakraborty, Partha Pratim
Nemzer, Louis R
Kassen, Rees
Experimental evidence that network topology can accelerate the spread of beneficial mutations
title Experimental evidence that network topology can accelerate the spread of beneficial mutations
title_full Experimental evidence that network topology can accelerate the spread of beneficial mutations
title_fullStr Experimental evidence that network topology can accelerate the spread of beneficial mutations
title_full_unstemmed Experimental evidence that network topology can accelerate the spread of beneficial mutations
title_short Experimental evidence that network topology can accelerate the spread of beneficial mutations
title_sort experimental evidence that network topology can accelerate the spread of beneficial mutations
topic Letters
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10693003/
https://www.ncbi.nlm.nih.gov/pubmed/38045727
http://dx.doi.org/10.1093/evlett/qrad047
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