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Phasor identifier: A cloud-based analysis of phasor-FLIM data on Python notebooks

This paper introduces an innovative approach utilizing Google Colaboratory for the versatile analysis of phasor fluorescence lifetime imaging microscopy (FLIM) data collected from various samples (e.g., cuvette, cells, tissues) and in various input file formats. In fact, phasor-FLIM widespread adopt...

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Detalles Bibliográficos
Autores principales: Bernardi, Mario, Cardarelli, Francesco
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10694583/
http://dx.doi.org/10.1016/j.bpr.2023.100135
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author Bernardi, Mario
Cardarelli, Francesco
author_facet Bernardi, Mario
Cardarelli, Francesco
author_sort Bernardi, Mario
collection PubMed
description This paper introduces an innovative approach utilizing Google Colaboratory for the versatile analysis of phasor fluorescence lifetime imaging microscopy (FLIM) data collected from various samples (e.g., cuvette, cells, tissues) and in various input file formats. In fact, phasor-FLIM widespread adoption has been hampered by complex instrumentation and data analysis requirements. We mean to make advanced FLIM analysis more accessible to researchers through a cloud-based solution that 1) harnesses robust computational resources, 2) eliminates hardware limitations, and 3) supports both CPU and GPU processing. We envision a paradigm shift in FLIM data accessibility and potential, aligning with the evolving field of artificial intelligence-driven FLIM analysis. This approach simplifies FLIM data handling and opens doors for diverse applications, from studying cellular metabolism to investigating drug encapsulation, benefiting researchers across multiple domains. The comparative analysis of freely distributed FLIM tools highlights the unique advantages of this approach in terms of adaptability, scalability, and open-source nature.
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spelling pubmed-106945832023-12-05 Phasor identifier: A cloud-based analysis of phasor-FLIM data on Python notebooks Bernardi, Mario Cardarelli, Francesco Biophys Rep (N Y) Article This paper introduces an innovative approach utilizing Google Colaboratory for the versatile analysis of phasor fluorescence lifetime imaging microscopy (FLIM) data collected from various samples (e.g., cuvette, cells, tissues) and in various input file formats. In fact, phasor-FLIM widespread adoption has been hampered by complex instrumentation and data analysis requirements. We mean to make advanced FLIM analysis more accessible to researchers through a cloud-based solution that 1) harnesses robust computational resources, 2) eliminates hardware limitations, and 3) supports both CPU and GPU processing. We envision a paradigm shift in FLIM data accessibility and potential, aligning with the evolving field of artificial intelligence-driven FLIM analysis. This approach simplifies FLIM data handling and opens doors for diverse applications, from studying cellular metabolism to investigating drug encapsulation, benefiting researchers across multiple domains. The comparative analysis of freely distributed FLIM tools highlights the unique advantages of this approach in terms of adaptability, scalability, and open-source nature. Elsevier 2023-11-07 /pmc/articles/PMC10694583/ http://dx.doi.org/10.1016/j.bpr.2023.100135 Text en © 2023 The Authors https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Bernardi, Mario
Cardarelli, Francesco
Phasor identifier: A cloud-based analysis of phasor-FLIM data on Python notebooks
title Phasor identifier: A cloud-based analysis of phasor-FLIM data on Python notebooks
title_full Phasor identifier: A cloud-based analysis of phasor-FLIM data on Python notebooks
title_fullStr Phasor identifier: A cloud-based analysis of phasor-FLIM data on Python notebooks
title_full_unstemmed Phasor identifier: A cloud-based analysis of phasor-FLIM data on Python notebooks
title_short Phasor identifier: A cloud-based analysis of phasor-FLIM data on Python notebooks
title_sort phasor identifier: a cloud-based analysis of phasor-flim data on python notebooks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10694583/
http://dx.doi.org/10.1016/j.bpr.2023.100135
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