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Automatic quantification of myocardial remodeling features in human ventricular tissue from label-free microscopy
The procedures used routinely for collagen and lipofuscin evaluation are, in many cases, qualitative, observer dependent, and disregard spatial distribution. Here, we present a protocol for automatic quantification and spatial characterization of collagen and lipofuscin from label-free microscopy im...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10694586/ https://www.ncbi.nlm.nih.gov/pubmed/37980568 http://dx.doi.org/10.1016/j.xpro.2023.102730 |
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author | García-Mendívil, Laura Pérez-Zabalza, María Duwé, Sam Ordovás, Laura Pueyo, Esther |
author_facet | García-Mendívil, Laura Pérez-Zabalza, María Duwé, Sam Ordovás, Laura Pueyo, Esther |
author_sort | García-Mendívil, Laura |
collection | PubMed |
description | The procedures used routinely for collagen and lipofuscin evaluation are, in many cases, qualitative, observer dependent, and disregard spatial distribution. Here, we present a protocol for automatic quantification and spatial characterization of collagen and lipofuscin from label-free microscopy images of human ventricular tissues. We describe the steps for sample collection, tissue processing, image acquisition, and quantification of collagen and lipofuscin. This protocol avoids discrepancies between observers and can be adapted to other tissues and species. For complete details on the use and execution of this protocol, please refer to García-Mendívil et al. (2022).(1) |
format | Online Article Text |
id | pubmed-10694586 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-106945862023-12-05 Automatic quantification of myocardial remodeling features in human ventricular tissue from label-free microscopy García-Mendívil, Laura Pérez-Zabalza, María Duwé, Sam Ordovás, Laura Pueyo, Esther STAR Protoc Protocol The procedures used routinely for collagen and lipofuscin evaluation are, in many cases, qualitative, observer dependent, and disregard spatial distribution. Here, we present a protocol for automatic quantification and spatial characterization of collagen and lipofuscin from label-free microscopy images of human ventricular tissues. We describe the steps for sample collection, tissue processing, image acquisition, and quantification of collagen and lipofuscin. This protocol avoids discrepancies between observers and can be adapted to other tissues and species. For complete details on the use and execution of this protocol, please refer to García-Mendívil et al. (2022).(1) Elsevier 2023-11-18 /pmc/articles/PMC10694586/ /pubmed/37980568 http://dx.doi.org/10.1016/j.xpro.2023.102730 Text en © 2023 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Protocol García-Mendívil, Laura Pérez-Zabalza, María Duwé, Sam Ordovás, Laura Pueyo, Esther Automatic quantification of myocardial remodeling features in human ventricular tissue from label-free microscopy |
title | Automatic quantification of myocardial remodeling features in human ventricular tissue from label-free microscopy |
title_full | Automatic quantification of myocardial remodeling features in human ventricular tissue from label-free microscopy |
title_fullStr | Automatic quantification of myocardial remodeling features in human ventricular tissue from label-free microscopy |
title_full_unstemmed | Automatic quantification of myocardial remodeling features in human ventricular tissue from label-free microscopy |
title_short | Automatic quantification of myocardial remodeling features in human ventricular tissue from label-free microscopy |
title_sort | automatic quantification of myocardial remodeling features in human ventricular tissue from label-free microscopy |
topic | Protocol |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10694586/ https://www.ncbi.nlm.nih.gov/pubmed/37980568 http://dx.doi.org/10.1016/j.xpro.2023.102730 |
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