Cargando…

Integrative analyses and validation of ferroptosis-related genes and mechanisms associated with cerebrovascular and cardiovascular ischemic diseases

BACKGROUND: There has been a gradual increase in the occurrence of cardiovascular and cerebrovascular ischemic diseases, particularly as comorbidities. Yet, the mechanisms underlying these diseases remain unclear. Ferroptosis has emerged as a potential contributor to cardio-cerebral ischemic process...

Descripción completa

Detalles Bibliográficos
Autores principales: Liao, Wei, Wen, Yuehui, Zeng, Chuan, Yang, Shaochun, Duan, Yanyu, He, Chunming, Liu, Ziyou
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10694919/
http://dx.doi.org/10.1186/s12864-023-09829-w
_version_ 1785153480547106816
author Liao, Wei
Wen, Yuehui
Zeng, Chuan
Yang, Shaochun
Duan, Yanyu
He, Chunming
Liu, Ziyou
author_facet Liao, Wei
Wen, Yuehui
Zeng, Chuan
Yang, Shaochun
Duan, Yanyu
He, Chunming
Liu, Ziyou
author_sort Liao, Wei
collection PubMed
description BACKGROUND: There has been a gradual increase in the occurrence of cardiovascular and cerebrovascular ischemic diseases, particularly as comorbidities. Yet, the mechanisms underlying these diseases remain unclear. Ferroptosis has emerged as a potential contributor to cardio-cerebral ischemic processes. Therefore, this study investigated the shared biological mechanisms between the two processes, as well as the role of ferroptosis genes in cardio-cerebral ischemic damage, by constructing co-expression modules for myocardial ischemia (MI) and ischemic stroke (IS) and a network of protein–protein interactions, mRNA-miRNA, mRNA-transcription factors (TFs), mRNA-RNA-binding proteins (RBPs), and mRNA-drug interactions. RESULTS: The study identified seven key genes, specifically ACSL1, TLR4, ADIPOR1, G0S2, PDK4, HP, PTGS2, and subjected them to functional enrichment analysis during ischemia. The predicted miRNAs were found to interact with 35 hub genes, and interactions were observed between 11 hub genes and 30 TF transcription factors. Additionally, 10 RBPs corresponding to 16 hub genes and 163 molecular compounds corresponding to 30 hub genes were identified. This study also clarified the levels of immune infiltration between MI and IS and different subtypes. Finally, we identified four hub genes, including TLR4, by using a diagnostic model constructed by Least Absolute Shrinkage and Selection Operator (LASSO) regression analysis; ADIPOR1, G0S2, and HP were shown to have diagnostic value for the co-pathogenesis of MI and cerebral ischemia by both validation test data and RT-qPCR assay. CONCLUSIONS: To the best our knowledge, this study is the first to utilize multiple algorithms to comprehensively analyze the biological processes of MI and IS from various perspectives. The four hub genes, TLR4, ADIPOR1, G0S2, and HP, have proven valuable in offering insights for the investigation of shared injury pathways in cardio-cerebral injuries. Therefore, these genes may serve as diagnostic markers for cardio-cerebral ischemic diseases. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12864-023-09829-w.
format Online
Article
Text
id pubmed-10694919
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-106949192023-12-05 Integrative analyses and validation of ferroptosis-related genes and mechanisms associated with cerebrovascular and cardiovascular ischemic diseases Liao, Wei Wen, Yuehui Zeng, Chuan Yang, Shaochun Duan, Yanyu He, Chunming Liu, Ziyou BMC Genomics Research BACKGROUND: There has been a gradual increase in the occurrence of cardiovascular and cerebrovascular ischemic diseases, particularly as comorbidities. Yet, the mechanisms underlying these diseases remain unclear. Ferroptosis has emerged as a potential contributor to cardio-cerebral ischemic processes. Therefore, this study investigated the shared biological mechanisms between the two processes, as well as the role of ferroptosis genes in cardio-cerebral ischemic damage, by constructing co-expression modules for myocardial ischemia (MI) and ischemic stroke (IS) and a network of protein–protein interactions, mRNA-miRNA, mRNA-transcription factors (TFs), mRNA-RNA-binding proteins (RBPs), and mRNA-drug interactions. RESULTS: The study identified seven key genes, specifically ACSL1, TLR4, ADIPOR1, G0S2, PDK4, HP, PTGS2, and subjected them to functional enrichment analysis during ischemia. The predicted miRNAs were found to interact with 35 hub genes, and interactions were observed between 11 hub genes and 30 TF transcription factors. Additionally, 10 RBPs corresponding to 16 hub genes and 163 molecular compounds corresponding to 30 hub genes were identified. This study also clarified the levels of immune infiltration between MI and IS and different subtypes. Finally, we identified four hub genes, including TLR4, by using a diagnostic model constructed by Least Absolute Shrinkage and Selection Operator (LASSO) regression analysis; ADIPOR1, G0S2, and HP were shown to have diagnostic value for the co-pathogenesis of MI and cerebral ischemia by both validation test data and RT-qPCR assay. CONCLUSIONS: To the best our knowledge, this study is the first to utilize multiple algorithms to comprehensively analyze the biological processes of MI and IS from various perspectives. The four hub genes, TLR4, ADIPOR1, G0S2, and HP, have proven valuable in offering insights for the investigation of shared injury pathways in cardio-cerebral injuries. Therefore, these genes may serve as diagnostic markers for cardio-cerebral ischemic diseases. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12864-023-09829-w. BioMed Central 2023-12-04 /pmc/articles/PMC10694919/ http://dx.doi.org/10.1186/s12864-023-09829-w Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Liao, Wei
Wen, Yuehui
Zeng, Chuan
Yang, Shaochun
Duan, Yanyu
He, Chunming
Liu, Ziyou
Integrative analyses and validation of ferroptosis-related genes and mechanisms associated with cerebrovascular and cardiovascular ischemic diseases
title Integrative analyses and validation of ferroptosis-related genes and mechanisms associated with cerebrovascular and cardiovascular ischemic diseases
title_full Integrative analyses and validation of ferroptosis-related genes and mechanisms associated with cerebrovascular and cardiovascular ischemic diseases
title_fullStr Integrative analyses and validation of ferroptosis-related genes and mechanisms associated with cerebrovascular and cardiovascular ischemic diseases
title_full_unstemmed Integrative analyses and validation of ferroptosis-related genes and mechanisms associated with cerebrovascular and cardiovascular ischemic diseases
title_short Integrative analyses and validation of ferroptosis-related genes and mechanisms associated with cerebrovascular and cardiovascular ischemic diseases
title_sort integrative analyses and validation of ferroptosis-related genes and mechanisms associated with cerebrovascular and cardiovascular ischemic diseases
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10694919/
http://dx.doi.org/10.1186/s12864-023-09829-w
work_keys_str_mv AT liaowei integrativeanalysesandvalidationofferroptosisrelatedgenesandmechanismsassociatedwithcerebrovascularandcardiovascularischemicdiseases
AT wenyuehui integrativeanalysesandvalidationofferroptosisrelatedgenesandmechanismsassociatedwithcerebrovascularandcardiovascularischemicdiseases
AT zengchuan integrativeanalysesandvalidationofferroptosisrelatedgenesandmechanismsassociatedwithcerebrovascularandcardiovascularischemicdiseases
AT yangshaochun integrativeanalysesandvalidationofferroptosisrelatedgenesandmechanismsassociatedwithcerebrovascularandcardiovascularischemicdiseases
AT duanyanyu integrativeanalysesandvalidationofferroptosisrelatedgenesandmechanismsassociatedwithcerebrovascularandcardiovascularischemicdiseases
AT hechunming integrativeanalysesandvalidationofferroptosisrelatedgenesandmechanismsassociatedwithcerebrovascularandcardiovascularischemicdiseases
AT liuziyou integrativeanalysesandvalidationofferroptosisrelatedgenesandmechanismsassociatedwithcerebrovascularandcardiovascularischemicdiseases