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Genome-wide identification and evolutionary view of ALOG gene family in Solanaceae
The ALOG gene family, which was named after its earliest identified members ( Arabidopsis LSH1 and Oryza G1), encodes a class of transcription factors (TF) characterized by the presence of a highly conserved ALOG domain. These proteins are found in various plant species playing regulatory roles in p...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Sociedade Brasileira de Genética
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10695626/ http://dx.doi.org/10.1590/1415-4757-GMB-2023-0142 |
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author | Turchetto, Caroline Silvério, Ariadne de Castro Waschburger, Edgar Luis Lacerda, Maria Eduarda Gonçalves Quintana, Isadora Vieira Turchetto-Zolet, Andreia Carina |
author_facet | Turchetto, Caroline Silvério, Ariadne de Castro Waschburger, Edgar Luis Lacerda, Maria Eduarda Gonçalves Quintana, Isadora Vieira Turchetto-Zolet, Andreia Carina |
author_sort | Turchetto, Caroline |
collection | PubMed |
description | The ALOG gene family, which was named after its earliest identified members ( Arabidopsis LSH1 and Oryza G1), encodes a class of transcription factors (TF) characterized by the presence of a highly conserved ALOG domain. These proteins are found in various plant species playing regulatory roles in plant growth, development, and morphological diversification of inflorescence. The functional characterization of these genes in some plant species has demonstrated their involvement in floral architecture. In this study, we used a genome-wide and phylogenetic approach to gain insights into plants’ origin, diversification, and functional aspects of the ALOG gene family. In total, 648 ALOG homologous genes were identified in 77 Viridiplantae species, and their evolutionary relationships were inferred using maximum likelihood phylogenetic analyses. Our results suggested that the ALOG gene family underwent several rounds of gene duplication and diversification during angiosperm evolution. Furthermore, we found three functional orthologous groups in Solanaceae species. The study provides insights into the evolutionary history and functional diversification of the ALOG gene family, which could aid in understanding the mechanisms underlying floral architecture in angiosperms. |
format | Online Article Text |
id | pubmed-10695626 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Sociedade Brasileira de Genética |
record_format | MEDLINE/PubMed |
spelling | pubmed-106956262023-12-05 Genome-wide identification and evolutionary view of ALOG gene family in Solanaceae Turchetto, Caroline Silvério, Ariadne de Castro Waschburger, Edgar Luis Lacerda, Maria Eduarda Gonçalves Quintana, Isadora Vieira Turchetto-Zolet, Andreia Carina Genet Mol Biol 60 years of the PPGBM UFRGS - Special Issue The ALOG gene family, which was named after its earliest identified members ( Arabidopsis LSH1 and Oryza G1), encodes a class of transcription factors (TF) characterized by the presence of a highly conserved ALOG domain. These proteins are found in various plant species playing regulatory roles in plant growth, development, and morphological diversification of inflorescence. The functional characterization of these genes in some plant species has demonstrated their involvement in floral architecture. In this study, we used a genome-wide and phylogenetic approach to gain insights into plants’ origin, diversification, and functional aspects of the ALOG gene family. In total, 648 ALOG homologous genes were identified in 77 Viridiplantae species, and their evolutionary relationships were inferred using maximum likelihood phylogenetic analyses. Our results suggested that the ALOG gene family underwent several rounds of gene duplication and diversification during angiosperm evolution. Furthermore, we found three functional orthologous groups in Solanaceae species. The study provides insights into the evolutionary history and functional diversification of the ALOG gene family, which could aid in understanding the mechanisms underlying floral architecture in angiosperms. Sociedade Brasileira de Genética 2023-12-01 /pmc/articles/PMC10695626/ http://dx.doi.org/10.1590/1415-4757-GMB-2023-0142 Text en https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License |
spellingShingle | 60 years of the PPGBM UFRGS - Special Issue Turchetto, Caroline Silvério, Ariadne de Castro Waschburger, Edgar Luis Lacerda, Maria Eduarda Gonçalves Quintana, Isadora Vieira Turchetto-Zolet, Andreia Carina Genome-wide identification and evolutionary view of ALOG gene family in Solanaceae |
title | Genome-wide identification and evolutionary view of ALOG gene family in Solanaceae |
title_full | Genome-wide identification and evolutionary view of ALOG gene family in Solanaceae |
title_fullStr | Genome-wide identification and evolutionary view of ALOG gene family in Solanaceae |
title_full_unstemmed | Genome-wide identification and evolutionary view of ALOG gene family in Solanaceae |
title_short | Genome-wide identification and evolutionary view of ALOG gene family in Solanaceae |
title_sort | genome-wide identification and evolutionary view of alog gene family in solanaceae |
topic | 60 years of the PPGBM UFRGS - Special Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10695626/ http://dx.doi.org/10.1590/1415-4757-GMB-2023-0142 |
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