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Genome-wide identification and evolutionary view of ALOG gene family in Solanaceae

The ALOG gene family, which was named after its earliest identified members ( Arabidopsis LSH1 and Oryza G1), encodes a class of transcription factors (TF) characterized by the presence of a highly conserved ALOG domain. These proteins are found in various plant species playing regulatory roles in p...

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Autores principales: Turchetto, Caroline, Silvério, Ariadne de Castro, Waschburger, Edgar Luis, Lacerda, Maria Eduarda Gonçalves, Quintana, Isadora Vieira, Turchetto-Zolet, Andreia Carina
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Sociedade Brasileira de Genética 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10695626/
http://dx.doi.org/10.1590/1415-4757-GMB-2023-0142
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author Turchetto, Caroline
Silvério, Ariadne de Castro
Waschburger, Edgar Luis
Lacerda, Maria Eduarda Gonçalves
Quintana, Isadora Vieira
Turchetto-Zolet, Andreia Carina
author_facet Turchetto, Caroline
Silvério, Ariadne de Castro
Waschburger, Edgar Luis
Lacerda, Maria Eduarda Gonçalves
Quintana, Isadora Vieira
Turchetto-Zolet, Andreia Carina
author_sort Turchetto, Caroline
collection PubMed
description The ALOG gene family, which was named after its earliest identified members ( Arabidopsis LSH1 and Oryza G1), encodes a class of transcription factors (TF) characterized by the presence of a highly conserved ALOG domain. These proteins are found in various plant species playing regulatory roles in plant growth, development, and morphological diversification of inflorescence. The functional characterization of these genes in some plant species has demonstrated their involvement in floral architecture. In this study, we used a genome-wide and phylogenetic approach to gain insights into plants’ origin, diversification, and functional aspects of the ALOG gene family. In total, 648 ALOG homologous genes were identified in 77 Viridiplantae species, and their evolutionary relationships were inferred using maximum likelihood phylogenetic analyses. Our results suggested that the ALOG gene family underwent several rounds of gene duplication and diversification during angiosperm evolution. Furthermore, we found three functional orthologous groups in Solanaceae species. The study provides insights into the evolutionary history and functional diversification of the ALOG gene family, which could aid in understanding the mechanisms underlying floral architecture in angiosperms.
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spelling pubmed-106956262023-12-05 Genome-wide identification and evolutionary view of ALOG gene family in Solanaceae Turchetto, Caroline Silvério, Ariadne de Castro Waschburger, Edgar Luis Lacerda, Maria Eduarda Gonçalves Quintana, Isadora Vieira Turchetto-Zolet, Andreia Carina Genet Mol Biol 60 years of the PPGBM UFRGS - Special Issue The ALOG gene family, which was named after its earliest identified members ( Arabidopsis LSH1 and Oryza G1), encodes a class of transcription factors (TF) characterized by the presence of a highly conserved ALOG domain. These proteins are found in various plant species playing regulatory roles in plant growth, development, and morphological diversification of inflorescence. The functional characterization of these genes in some plant species has demonstrated their involvement in floral architecture. In this study, we used a genome-wide and phylogenetic approach to gain insights into plants’ origin, diversification, and functional aspects of the ALOG gene family. In total, 648 ALOG homologous genes were identified in 77 Viridiplantae species, and their evolutionary relationships were inferred using maximum likelihood phylogenetic analyses. Our results suggested that the ALOG gene family underwent several rounds of gene duplication and diversification during angiosperm evolution. Furthermore, we found three functional orthologous groups in Solanaceae species. The study provides insights into the evolutionary history and functional diversification of the ALOG gene family, which could aid in understanding the mechanisms underlying floral architecture in angiosperms. Sociedade Brasileira de Genética 2023-12-01 /pmc/articles/PMC10695626/ http://dx.doi.org/10.1590/1415-4757-GMB-2023-0142 Text en https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License
spellingShingle 60 years of the PPGBM UFRGS - Special Issue
Turchetto, Caroline
Silvério, Ariadne de Castro
Waschburger, Edgar Luis
Lacerda, Maria Eduarda Gonçalves
Quintana, Isadora Vieira
Turchetto-Zolet, Andreia Carina
Genome-wide identification and evolutionary view of ALOG gene family in Solanaceae
title Genome-wide identification and evolutionary view of ALOG gene family in Solanaceae
title_full Genome-wide identification and evolutionary view of ALOG gene family in Solanaceae
title_fullStr Genome-wide identification and evolutionary view of ALOG gene family in Solanaceae
title_full_unstemmed Genome-wide identification and evolutionary view of ALOG gene family in Solanaceae
title_short Genome-wide identification and evolutionary view of ALOG gene family in Solanaceae
title_sort genome-wide identification and evolutionary view of alog gene family in solanaceae
topic 60 years of the PPGBM UFRGS - Special Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10695626/
http://dx.doi.org/10.1590/1415-4757-GMB-2023-0142
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