Cargando…

Whole genome sequencing data of Leptospira weilii and Leptospira kirschneri isolated from human subjects of Sri Lanka

Leptospirosis is a re-emerging zoonotic disease. This article reports the complete genome sequences of three novel strains of Genus Leptospira: two from the species Leptospira weilii (FMAS_RT1, FMAS_PD2) and one from Leptospira kirschneri (FMAS_PN5). These isolates were recovered from the blood samp...

Descripción completa

Detalles Bibliográficos
Autores principales: Senavirathna, Indika, Jayasundara, Dinesha, Warnasekara, Janith, Matthias, Michael A., Vinetz, Joseph M., Agampodi, Suneth
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10696454/
http://dx.doi.org/10.1016/j.dib.2023.109840
_version_ 1785154573697024000
author Senavirathna, Indika
Jayasundara, Dinesha
Warnasekara, Janith
Matthias, Michael A.
Vinetz, Joseph M.
Agampodi, Suneth
author_facet Senavirathna, Indika
Jayasundara, Dinesha
Warnasekara, Janith
Matthias, Michael A.
Vinetz, Joseph M.
Agampodi, Suneth
author_sort Senavirathna, Indika
collection PubMed
description Leptospirosis is a re-emerging zoonotic disease. This article reports the complete genome sequences of three novel strains of Genus Leptospira: two from the species Leptospira weilii (FMAS_RT1, FMAS_PD2) and one from Leptospira kirschneri (FMAS_PN5). These isolates were recovered from the blood samples of acute febrile patients in different geographical and climatic zones of Sri Lanka. High-quality genomic DNA was extracted from the three isolates in mid-log phase cultures. Whole genome sequencing was conducted using the PacBio Single Molecule Real-Time (SMRT) platform to identify the species, genome features, and novelty of the strains. The annotation was conducted using RAST (Rapid Annotation Using Subsystem Technology version 2.0) and the NCBI Prokaryotic Genome Annotation Pipeline. The genome sequences of three isolates have been deposited in the Mendeley data repository and the National Center for Biotechnology Information (NCBI) repository. This data will be useful for future researchers when conducting comparative genomic analysis, revealing the exact mechanism of pathogenesis of leptospirosis and developing molecular diagnostic tools for early detection.
format Online
Article
Text
id pubmed-10696454
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-106964542023-12-06 Whole genome sequencing data of Leptospira weilii and Leptospira kirschneri isolated from human subjects of Sri Lanka Senavirathna, Indika Jayasundara, Dinesha Warnasekara, Janith Matthias, Michael A. Vinetz, Joseph M. Agampodi, Suneth Data Brief Data Article Leptospirosis is a re-emerging zoonotic disease. This article reports the complete genome sequences of three novel strains of Genus Leptospira: two from the species Leptospira weilii (FMAS_RT1, FMAS_PD2) and one from Leptospira kirschneri (FMAS_PN5). These isolates were recovered from the blood samples of acute febrile patients in different geographical and climatic zones of Sri Lanka. High-quality genomic DNA was extracted from the three isolates in mid-log phase cultures. Whole genome sequencing was conducted using the PacBio Single Molecule Real-Time (SMRT) platform to identify the species, genome features, and novelty of the strains. The annotation was conducted using RAST (Rapid Annotation Using Subsystem Technology version 2.0) and the NCBI Prokaryotic Genome Annotation Pipeline. The genome sequences of three isolates have been deposited in the Mendeley data repository and the National Center for Biotechnology Information (NCBI) repository. This data will be useful for future researchers when conducting comparative genomic analysis, revealing the exact mechanism of pathogenesis of leptospirosis and developing molecular diagnostic tools for early detection. Elsevier 2023-11-22 /pmc/articles/PMC10696454/ http://dx.doi.org/10.1016/j.dib.2023.109840 Text en © 2023 The Author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Senavirathna, Indika
Jayasundara, Dinesha
Warnasekara, Janith
Matthias, Michael A.
Vinetz, Joseph M.
Agampodi, Suneth
Whole genome sequencing data of Leptospira weilii and Leptospira kirschneri isolated from human subjects of Sri Lanka
title Whole genome sequencing data of Leptospira weilii and Leptospira kirschneri isolated from human subjects of Sri Lanka
title_full Whole genome sequencing data of Leptospira weilii and Leptospira kirschneri isolated from human subjects of Sri Lanka
title_fullStr Whole genome sequencing data of Leptospira weilii and Leptospira kirschneri isolated from human subjects of Sri Lanka
title_full_unstemmed Whole genome sequencing data of Leptospira weilii and Leptospira kirschneri isolated from human subjects of Sri Lanka
title_short Whole genome sequencing data of Leptospira weilii and Leptospira kirschneri isolated from human subjects of Sri Lanka
title_sort whole genome sequencing data of leptospira weilii and leptospira kirschneri isolated from human subjects of sri lanka
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10696454/
http://dx.doi.org/10.1016/j.dib.2023.109840
work_keys_str_mv AT senavirathnaindika wholegenomesequencingdataofleptospiraweiliiandleptospirakirschneriisolatedfromhumansubjectsofsrilanka
AT jayasundaradinesha wholegenomesequencingdataofleptospiraweiliiandleptospirakirschneriisolatedfromhumansubjectsofsrilanka
AT warnasekarajanith wholegenomesequencingdataofleptospiraweiliiandleptospirakirschneriisolatedfromhumansubjectsofsrilanka
AT matthiasmichaela wholegenomesequencingdataofleptospiraweiliiandleptospirakirschneriisolatedfromhumansubjectsofsrilanka
AT vinetzjosephm wholegenomesequencingdataofleptospiraweiliiandleptospirakirschneriisolatedfromhumansubjectsofsrilanka
AT agampodisuneth wholegenomesequencingdataofleptospiraweiliiandleptospirakirschneriisolatedfromhumansubjectsofsrilanka