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HDBStat!: A platform-independent software suite for statistical analysis of high dimensional biology data

BACKGROUND: Many efforts in microarray data analysis are focused on providing tools and methods for the qualitative analysis of microarray data. HDBStat! (High-Dimensional Biology-Statistics) is a software package designed for analysis of high dimensional biology data such as microarray data. It was...

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Detalles Bibliográficos
Autores principales: Trivedi, Prinal, Edwards, Jode W, Wang, Jelai, Gadbury, Gary L, Srinivasasainagendra, Vinodh, Zakharkin, Stanislav O, Kim, Kyoungmi, Mehta, Tapan, Brand, Jacob PL, Patki, Amit, Page, Grier P, Allison, David B
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2005
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1087834/
https://www.ncbi.nlm.nih.gov/pubmed/15813968
http://dx.doi.org/10.1186/1471-2105-6-86
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author Trivedi, Prinal
Edwards, Jode W
Wang, Jelai
Gadbury, Gary L
Srinivasasainagendra, Vinodh
Zakharkin, Stanislav O
Kim, Kyoungmi
Mehta, Tapan
Brand, Jacob PL
Patki, Amit
Page, Grier P
Allison, David B
author_facet Trivedi, Prinal
Edwards, Jode W
Wang, Jelai
Gadbury, Gary L
Srinivasasainagendra, Vinodh
Zakharkin, Stanislav O
Kim, Kyoungmi
Mehta, Tapan
Brand, Jacob PL
Patki, Amit
Page, Grier P
Allison, David B
author_sort Trivedi, Prinal
collection PubMed
description BACKGROUND: Many efforts in microarray data analysis are focused on providing tools and methods for the qualitative analysis of microarray data. HDBStat! (High-Dimensional Biology-Statistics) is a software package designed for analysis of high dimensional biology data such as microarray data. It was initially developed for the analysis of microarray gene expression data, but it can also be used for some applications in proteomics and other aspects of genomics. HDBStat! provides statisticians and biologists a flexible and easy-to-use interface to analyze complex microarray data using a variety of methods for data preprocessing, quality control analysis and hypothesis testing. RESULTS: Results generated from data preprocessing methods, quality control analysis and hypothesis testing methods are output in the form of Excel CSV tables, graphs and an Html report summarizing data analysis. CONCLUSION: HDBStat! is a platform-independent software that is freely available to academic institutions and non-profit organizations. It can be downloaded from our website .
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spelling pubmed-10878342005-04-30 HDBStat!: A platform-independent software suite for statistical analysis of high dimensional biology data Trivedi, Prinal Edwards, Jode W Wang, Jelai Gadbury, Gary L Srinivasasainagendra, Vinodh Zakharkin, Stanislav O Kim, Kyoungmi Mehta, Tapan Brand, Jacob PL Patki, Amit Page, Grier P Allison, David B BMC Bioinformatics Software BACKGROUND: Many efforts in microarray data analysis are focused on providing tools and methods for the qualitative analysis of microarray data. HDBStat! (High-Dimensional Biology-Statistics) is a software package designed for analysis of high dimensional biology data such as microarray data. It was initially developed for the analysis of microarray gene expression data, but it can also be used for some applications in proteomics and other aspects of genomics. HDBStat! provides statisticians and biologists a flexible and easy-to-use interface to analyze complex microarray data using a variety of methods for data preprocessing, quality control analysis and hypothesis testing. RESULTS: Results generated from data preprocessing methods, quality control analysis and hypothesis testing methods are output in the form of Excel CSV tables, graphs and an Html report summarizing data analysis. CONCLUSION: HDBStat! is a platform-independent software that is freely available to academic institutions and non-profit organizations. It can be downloaded from our website . BioMed Central 2005-04-06 /pmc/articles/PMC1087834/ /pubmed/15813968 http://dx.doi.org/10.1186/1471-2105-6-86 Text en Copyright © 2005 Trivedi et al; licensee BioMed Central Ltd.
spellingShingle Software
Trivedi, Prinal
Edwards, Jode W
Wang, Jelai
Gadbury, Gary L
Srinivasasainagendra, Vinodh
Zakharkin, Stanislav O
Kim, Kyoungmi
Mehta, Tapan
Brand, Jacob PL
Patki, Amit
Page, Grier P
Allison, David B
HDBStat!: A platform-independent software suite for statistical analysis of high dimensional biology data
title HDBStat!: A platform-independent software suite for statistical analysis of high dimensional biology data
title_full HDBStat!: A platform-independent software suite for statistical analysis of high dimensional biology data
title_fullStr HDBStat!: A platform-independent software suite for statistical analysis of high dimensional biology data
title_full_unstemmed HDBStat!: A platform-independent software suite for statistical analysis of high dimensional biology data
title_short HDBStat!: A platform-independent software suite for statistical analysis of high dimensional biology data
title_sort hdbstat!: a platform-independent software suite for statistical analysis of high dimensional biology data
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1087834/
https://www.ncbi.nlm.nih.gov/pubmed/15813968
http://dx.doi.org/10.1186/1471-2105-6-86
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