Cargando…

Transcriptional slippage in bacteria: distribution in sequenced genomes and utilization in IS element gene expression

BACKGROUND: Transcription slippage occurs on certain patterns of repeat mononucleotides, resulting in synthesis of a heterogeneous population of mRNAs. Individual mRNA molecules within this population differ in the number of nucleotides they contain that are not specified by the template. When trans...

Descripción completa

Detalles Bibliográficos
Autores principales:	Baranov, Pavel V, Hammer, Andrew W, Zhou, Jiadong, Gesteland, Raymond F, Atkins, John F
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2005
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1088944/ https://www.ncbi.nlm.nih.gov/pubmed/15774026 http://dx.doi.org/10.1186/gb-2005-6-3-r25

Ejemplares similares

Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use
por: Atkins, John F., et al.
Publicado: (2016)

Transcriptional slippage occurs during elongation at runs of adenine or thymine in Escherichia coli.
por: Wagner, L A, et al.
Publicado: (1990)

Specific reverse transcriptase slippage at the HIV ribosomal frameshift sequence: potential implications for modulation of GagPol synthesis
por: Penno, Christophe, et al.
Publicado: (2017)

Transcriptional slippage in the positive-sense RNA virus family Potyviridae
por: Olspert, Allan, et al.
Publicado: (2015)

Programmed ribosomal frameshifting in decoding the SARS-CoV genome
por: Baranov, Pavel V., et al.
Publicado: (2005)

Diverse bacterial genomes encode an operon of two genes, one of which is an unusual class-I release factor that potentially recognizes atypical mRNA signals other than normal stop codons
por: Baranov, Pavel V, et al.
Publicado: (2006)

Evaluation of GFP reporter utility for analysis of transcriptional slippage during gene expression
por: Wons, Ewa, et al.
Publicado: (2018)

Stimulation of stop codon readthrough: frequent presence of an extended 3′ RNA structural element
por: Firth, Andrew E., et al.
Publicado: (2011)

Transcriptional Slippage and RNA Editing Increase the Diversity of Transcripts in Chloroplasts: Insight from Deep Sequencing of Vigna radiata Genome and Transcriptome
por: Lin, Ching-Ping, et al.
Publicado: (2015)

Sequences Promoting Recoding Are Singular Genomic Elements
por: Baranov, Pavel V., et al.
Publicado: (2009)

Intricacies of ribosomal frameshifting
por: Atkins, John F., et al.
Publicado: (1999)

Structural probing and mutagenic analysis of the stem-loop required for Escherichia coli dnaX ribosomal frameshifting: programmed efficiency of 50%
por: Larsen, Bente, et al.
Publicado: (1997)

Maximum depth sequencing reveals an ON/OFF replication slippage switch and apparent in vivo selection for bifidobacterial pilus expression
por: Penno, Christophe, et al.
Publicado: (2022)

Genome-Wide Spectra of Transcription Insertions and Deletions Reveal That Slippage Depends on RNA:DNA Hybrid Complementarity
por: Traverse, Charles C., et al.
Publicado: (2017)

Antizyme expression: a subversion of triplet decoding, which is remarkably conserved by evolution, is a sensor for an autoregulatory circuit
por: Ivanov, Ivaylo P., et al.
Publicado: (2000)

Ribosome gymnastics—Degree of difficulty 9.5, style 10.0
por: Atkins, John F., et al.
Publicado: (1990)

Identification of regions in multiple sequence alignments thermodynamically suitable for targeting by consensus oligonucleotides: application to HIV genome
por: Matveeva, Olga V, et al.
Publicado: (2004)

Propensity of a picornavirus polymerase to slip on potyvirus-derived transcriptional slippage sites
por: Stewart, Hazel, et al.
Publicado: (2019)

Slippage Detection with Piezoresistive Tactile Sensors
por: Romeo, Rocco A., et al.
Publicado: (2017)

Efficient tactile encoding of object slippage
por: Willemet, Laurence, et al.
Publicado: (2022)

Firmicutes-enriched IS1447 represents a group of IS3-family insertion sequences exhibiting unique + 1 transcriptional slippage
por: Liu, Ya-Jun, et al.
Publicado: (2018)

The Effect of Phase Slippage in Multicell Cavities on Longitudinal Beam Dynamics
por: Gerigk, F
Publicado: (2001)

Mutational analysis of the Potyviridae transcriptional slippage site utilized for expression of the P3N-PIPO and P1N-PISPO proteins
por: Olspert, Allan, et al.
Publicado: (2016)

Bacteriophage λ N protein inhibits transcription slippage by Escherichia coli RNA polymerase
por: Parks, Adam R., et al.
Publicado: (2014)

Synchronization, Slippage, and Unbundling of Driven Helical Flagella
por: Reigh, Shang Yik, et al.
Publicado: (2013)

Studying slippage on pushing applications with snake robots
por: Reyes, Fabian, et al.
Publicado: (2017)

The Shunt Slippage: A Complication of Pumping Test
por: Kim, El
Publicado: (2022)

Computed Tomography Assessment of Gastric Band Slippage
por: Burt, Jeremy R., et al.
Publicado: (2022)

Identification of a New Antizyme mRNA +1 Frameshifting Stimulatory Pseudoknot in a Subset of Diverse Invertebrates and its Apparent Absence in Intermediate Species
por: Ivanov, Ivaylo P, et al.
Publicado: (2004)

Low Base-Substitution Mutation Rate but High Rate of Slippage Mutations in the Sequence Repeat-Rich Genome of Dictyostelium discoideum
por: Kucukyildirim, Sibel, et al.
Publicado: (2020)

Conservation of polyamine regulation by translational frameshifting from yeast to mammals
por: Ivanov, Ivaylo P., et al.
Publicado: (2000)

Slippage in stacking of graphene nanofragments induced by spin polarization
por: Lei, Yanyu, et al.
Publicado: (2015)

Adaptation by Deletogenic Replication Slippage in a Nascent Symbiont
por: Clayton, Adam L., et al.
Publicado: (2016)

Massive radius-dependent flow slippage in carbon nanotubes
por: Secchi, Eleonora, et al.
Publicado: (2016)

Ion slippage through Li(+)-centered G-quadruplex
por: Cho, Seok-Kyu, et al.
Publicado: (2022)

An ecologically-controlled exoskeleton can improve balance recovery after slippage
por: Monaco, V., et al.
Publicado: (2017)

Cytosine Unstacking and Strand Slippage at an Insertion–Deletion Mutation Sequence in an Overhang-Containing DNA Duplex
por: Manjari, Swati R., et al.
Publicado: (2014)

New Insights into Transcription Fidelity: Thermal Stability of Non-Canonical Structures in Template DNA Regulates Transcriptional Arrest, Pause, and Slippage
por: Tateishi-Karimata, Hisae, et al.
Publicado: (2014)

ATP-Induced Helicase Slippage Reveals Highly Coordinated Subunits
por: Sun, Bo, et al.
Publicado: (2011)

The effect of phase slippage in multicell cavities on longitudinal beam dynamics
por: Gerigk, Frank
Publicado: (2001)

Cannot write session to /tmp/vufind_sessions/sess_pj9cdjpe40jqsrbsi3v6jst5ua