TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis

We present the second and improved release of the TOUCAN workbench for cis-regulatory sequence analysis. TOUCAN implements and integrates fast state-of-the-art methods and strategies in gene regulation bioinformatics, including algorithms for comparative genomics and for the detection of cis-regulat...

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Detalles Bibliográficos
Autores principales: Aerts, Stein, Van Loo, Peter, Thijs, Gert, Mayer, Herbert, de Martin, Rainer, Moreau, Yves, De Moor, Bart
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2005
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160115/
https://www.ncbi.nlm.nih.gov/pubmed/15980497
http://dx.doi.org/10.1093/nar/gki354
Descripción
Sumario:We present the second and improved release of the TOUCAN workbench for cis-regulatory sequence analysis. TOUCAN implements and integrates fast state-of-the-art methods and strategies in gene regulation bioinformatics, including algorithms for comparative genomics and for the detection of cis-regulatory modules. This second release of TOUCAN has become open source and thereby carries the potential to evolve rapidly. The main goal of TOUCAN is to allow a user to come to testable hypotheses regarding the regulation of a gene or of a set of co-regulated genes. TOUCAN can be launched from this location: .

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