TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis

We present the second and improved release of the TOUCAN workbench for cis-regulatory sequence analysis. TOUCAN implements and integrates fast state-of-the-art methods and strategies in gene regulation bioinformatics, including algorithms for comparative genomics and for the detection of cis-regulat...

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Autores principales: Aerts, Stein, Van Loo, Peter, Thijs, Gert, Mayer, Herbert, de Martin, Rainer, Moreau, Yves, De Moor, Bart
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2005
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160115/
https://www.ncbi.nlm.nih.gov/pubmed/15980497
http://dx.doi.org/10.1093/nar/gki354
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author Aerts, Stein
Van Loo, Peter
Thijs, Gert
Mayer, Herbert
de Martin, Rainer
Moreau, Yves
De Moor, Bart
author_facet Aerts, Stein
Van Loo, Peter
Thijs, Gert
Mayer, Herbert
de Martin, Rainer
Moreau, Yves
De Moor, Bart
author_sort Aerts, Stein
collection PubMed
description We present the second and improved release of the TOUCAN workbench for cis-regulatory sequence analysis. TOUCAN implements and integrates fast state-of-the-art methods and strategies in gene regulation bioinformatics, including algorithms for comparative genomics and for the detection of cis-regulatory modules. This second release of TOUCAN has become open source and thereby carries the potential to evolve rapidly. The main goal of TOUCAN is to allow a user to come to testable hypotheses regarding the regulation of a gene or of a set of co-regulated genes. TOUCAN can be launched from this location: .
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spelling pubmed-11601152005-06-29 TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis Aerts, Stein Van Loo, Peter Thijs, Gert Mayer, Herbert de Martin, Rainer Moreau, Yves De Moor, Bart Nucleic Acids Res Article We present the second and improved release of the TOUCAN workbench for cis-regulatory sequence analysis. TOUCAN implements and integrates fast state-of-the-art methods and strategies in gene regulation bioinformatics, including algorithms for comparative genomics and for the detection of cis-regulatory modules. This second release of TOUCAN has become open source and thereby carries the potential to evolve rapidly. The main goal of TOUCAN is to allow a user to come to testable hypotheses regarding the regulation of a gene or of a set of co-regulated genes. TOUCAN can be launched from this location: . Oxford University Press 2005-07-01 2005-06-27 /pmc/articles/PMC1160115/ /pubmed/15980497 http://dx.doi.org/10.1093/nar/gki354 Text en © The Author 2005. Published by Oxford University Press. All rights reserved
spellingShingle Article
Aerts, Stein
Van Loo, Peter
Thijs, Gert
Mayer, Herbert
de Martin, Rainer
Moreau, Yves
De Moor, Bart
TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis
title TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis
title_full TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis
title_fullStr TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis
title_full_unstemmed TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis
title_short TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis
title_sort toucan 2: the all-inclusive open source workbench for regulatory sequence analysis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160115/
https://www.ncbi.nlm.nih.gov/pubmed/15980497
http://dx.doi.org/10.1093/nar/gki354
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