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OrfPredictor: predicting protein-coding regions in EST-derived sequences
OrfPredictor is a web server designed for identifying protein-coding regions in expressed sequence tag (EST)-derived sequences. For query sequences with a hit in BLASTX, the program predicts the coding regions based on the translation reading frames identified in BLASTX alignments, otherwise, it pre...
Autores principales: | , , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2005
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160155/ https://www.ncbi.nlm.nih.gov/pubmed/15980561 http://dx.doi.org/10.1093/nar/gki394 |
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author | Min, Xiang Jia Butler, Gregory Storms, Reginald Tsang, Adrian |
author_facet | Min, Xiang Jia Butler, Gregory Storms, Reginald Tsang, Adrian |
author_sort | Min, Xiang Jia |
collection | PubMed |
description | OrfPredictor is a web server designed for identifying protein-coding regions in expressed sequence tag (EST)-derived sequences. For query sequences with a hit in BLASTX, the program predicts the coding regions based on the translation reading frames identified in BLASTX alignments, otherwise, it predicts the most probable coding region based on the intrinsic signals of the query sequences. The output is the predicted peptide sequences in the FASTA format, and a definition line that includes the query ID, the translation reading frame and the nucleotide positions where the coding region begins and ends. OrfPredictor facilitates the annotation of EST-derived sequences, particularly, for large-scale EST projects. OrfPredictor is available at . |
format | Text |
id | pubmed-1160155 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2005 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-11601552005-06-29 OrfPredictor: predicting protein-coding regions in EST-derived sequences Min, Xiang Jia Butler, Gregory Storms, Reginald Tsang, Adrian Nucleic Acids Res Article OrfPredictor is a web server designed for identifying protein-coding regions in expressed sequence tag (EST)-derived sequences. For query sequences with a hit in BLASTX, the program predicts the coding regions based on the translation reading frames identified in BLASTX alignments, otherwise, it predicts the most probable coding region based on the intrinsic signals of the query sequences. The output is the predicted peptide sequences in the FASTA format, and a definition line that includes the query ID, the translation reading frame and the nucleotide positions where the coding region begins and ends. OrfPredictor facilitates the annotation of EST-derived sequences, particularly, for large-scale EST projects. OrfPredictor is available at . Oxford University Press 2005-07-01 2005-06-27 /pmc/articles/PMC1160155/ /pubmed/15980561 http://dx.doi.org/10.1093/nar/gki394 Text en © The Author 2005. Published by Oxford University Press. All rights reserved |
spellingShingle | Article Min, Xiang Jia Butler, Gregory Storms, Reginald Tsang, Adrian OrfPredictor: predicting protein-coding regions in EST-derived sequences |
title | OrfPredictor: predicting protein-coding regions in EST-derived sequences |
title_full | OrfPredictor: predicting protein-coding regions in EST-derived sequences |
title_fullStr | OrfPredictor: predicting protein-coding regions in EST-derived sequences |
title_full_unstemmed | OrfPredictor: predicting protein-coding regions in EST-derived sequences |
title_short | OrfPredictor: predicting protein-coding regions in EST-derived sequences |
title_sort | orfpredictor: predicting protein-coding regions in est-derived sequences |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160155/ https://www.ncbi.nlm.nih.gov/pubmed/15980561 http://dx.doi.org/10.1093/nar/gki394 |
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