SPACE: a suite of tools for protein structure prediction and analysis based on complementarity and environment

We describe a suite of SPACE tools for analysis and prediction of structures of biomolecules and their complexes. LPC/CSU software provides a common definition of inter-atomic contacts and complementarity of contacting surfaces to analyze protein structure and complexes. In the current version of LP...

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Detalles Bibliográficos
Autores principales: Sobolev, Vladimir, Eyal, Eran, Gerzon, Sergey, Potapov, Vladimir, Babor, Mariana, Prilusky, Jaime, Edelman, Marvin
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2005
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160159/
https://www.ncbi.nlm.nih.gov/pubmed/15980496
http://dx.doi.org/10.1093/nar/gki398
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author Sobolev, Vladimir
Eyal, Eran
Gerzon, Sergey
Potapov, Vladimir
Babor, Mariana
Prilusky, Jaime
Edelman, Marvin
author_facet Sobolev, Vladimir
Eyal, Eran
Gerzon, Sergey
Potapov, Vladimir
Babor, Mariana
Prilusky, Jaime
Edelman, Marvin
author_sort Sobolev, Vladimir
collection PubMed
description We describe a suite of SPACE tools for analysis and prediction of structures of biomolecules and their complexes. LPC/CSU software provides a common definition of inter-atomic contacts and complementarity of contacting surfaces to analyze protein structure and complexes. In the current version of LPC/CSU, analyses of water molecules and nucleic acids have been added, together with improved and expanded visualization options using Chime or Java based Jmol. The SPACE suite includes servers and programs for: structural analysis of point mutations (MutaProt); side chain modeling based on surface complementarity (SCCOMP); building a crystal environment and analysis of crystal contacts (CryCo); construction and analysis of protein contact maps (CMA) and molecular docking software (LIGIN). The SPACE suite is accessed at .
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spelling pubmed-11601592005-06-29 SPACE: a suite of tools for protein structure prediction and analysis based on complementarity and environment Sobolev, Vladimir Eyal, Eran Gerzon, Sergey Potapov, Vladimir Babor, Mariana Prilusky, Jaime Edelman, Marvin Nucleic Acids Res Article We describe a suite of SPACE tools for analysis and prediction of structures of biomolecules and their complexes. LPC/CSU software provides a common definition of inter-atomic contacts and complementarity of contacting surfaces to analyze protein structure and complexes. In the current version of LPC/CSU, analyses of water molecules and nucleic acids have been added, together with improved and expanded visualization options using Chime or Java based Jmol. The SPACE suite includes servers and programs for: structural analysis of point mutations (MutaProt); side chain modeling based on surface complementarity (SCCOMP); building a crystal environment and analysis of crystal contacts (CryCo); construction and analysis of protein contact maps (CMA) and molecular docking software (LIGIN). The SPACE suite is accessed at . Oxford University Press 2005-07-01 2005-06-27 /pmc/articles/PMC1160159/ /pubmed/15980496 http://dx.doi.org/10.1093/nar/gki398 Text en © The Author 2005. Published by Oxford University Press. All rights reserved
spellingShingle Article
Sobolev, Vladimir
Eyal, Eran
Gerzon, Sergey
Potapov, Vladimir
Babor, Mariana
Prilusky, Jaime
Edelman, Marvin
SPACE: a suite of tools for protein structure prediction and analysis based on complementarity and environment
title SPACE: a suite of tools for protein structure prediction and analysis based on complementarity and environment
title_full SPACE: a suite of tools for protein structure prediction and analysis based on complementarity and environment
title_fullStr SPACE: a suite of tools for protein structure prediction and analysis based on complementarity and environment
title_full_unstemmed SPACE: a suite of tools for protein structure prediction and analysis based on complementarity and environment
title_short SPACE: a suite of tools for protein structure prediction and analysis based on complementarity and environment
title_sort space: a suite of tools for protein structure prediction and analysis based on complementarity and environment
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160159/
https://www.ncbi.nlm.nih.gov/pubmed/15980496
http://dx.doi.org/10.1093/nar/gki398
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