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REPPER—repeats and their periodicities in fibrous proteins
REPPER (REPeats and their PERiodicities) is an integrated server that detects and analyzes regions with short gapless repeats in protein sequences or alignments. It finds periodicities by Fourier Transform (FTwin) and internal similarity analysis (REPwin). FTwin assigns numerical values to amino aci...
Autores principales: | , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2005
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160166/ https://www.ncbi.nlm.nih.gov/pubmed/15980460 http://dx.doi.org/10.1093/nar/gki405 |
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author | Gruber, Markus Söding, Johannes Lupas, Andrei N. |
author_facet | Gruber, Markus Söding, Johannes Lupas, Andrei N. |
author_sort | Gruber, Markus |
collection | PubMed |
description | REPPER (REPeats and their PERiodicities) is an integrated server that detects and analyzes regions with short gapless repeats in protein sequences or alignments. It finds periodicities by Fourier Transform (FTwin) and internal similarity analysis (REPwin). FTwin assigns numerical values to amino acids that reflect certain properties, for instance hydrophobicity, and gives information on corresponding periodicities. REPwin uses self-alignments and displays repeats that reveal significant internal similarities. Both programs use a sliding window to ensure that different periodic regions within the same protein are detected independently. FTwin and REPwin are complemented by secondary structure prediction (PSIPRED) and coiled coil prediction (COILS), making the server a versatile analysis tool for sequences of fibrous proteins. REPPER is available at . |
format | Text |
id | pubmed-1160166 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2005 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-11601662005-06-29 REPPER—repeats and their periodicities in fibrous proteins Gruber, Markus Söding, Johannes Lupas, Andrei N. Nucleic Acids Res Article REPPER (REPeats and their PERiodicities) is an integrated server that detects and analyzes regions with short gapless repeats in protein sequences or alignments. It finds periodicities by Fourier Transform (FTwin) and internal similarity analysis (REPwin). FTwin assigns numerical values to amino acids that reflect certain properties, for instance hydrophobicity, and gives information on corresponding periodicities. REPwin uses self-alignments and displays repeats that reveal significant internal similarities. Both programs use a sliding window to ensure that different periodic regions within the same protein are detected independently. FTwin and REPwin are complemented by secondary structure prediction (PSIPRED) and coiled coil prediction (COILS), making the server a versatile analysis tool for sequences of fibrous proteins. REPPER is available at . Oxford University Press 2005-07-01 2005-06-27 /pmc/articles/PMC1160166/ /pubmed/15980460 http://dx.doi.org/10.1093/nar/gki405 Text en © The Author 2005. Published by Oxford University Press. All rights reserved |
spellingShingle | Article Gruber, Markus Söding, Johannes Lupas, Andrei N. REPPER—repeats and their periodicities in fibrous proteins |
title | REPPER—repeats and their periodicities in fibrous proteins |
title_full | REPPER—repeats and their periodicities in fibrous proteins |
title_fullStr | REPPER—repeats and their periodicities in fibrous proteins |
title_full_unstemmed | REPPER—repeats and their periodicities in fibrous proteins |
title_short | REPPER—repeats and their periodicities in fibrous proteins |
title_sort | repper—repeats and their periodicities in fibrous proteins |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160166/ https://www.ncbi.nlm.nih.gov/pubmed/15980460 http://dx.doi.org/10.1093/nar/gki405 |
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