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EVAcon: a protein contact prediction evaluation service
Here we introduce EVAcon, an automated web service that evaluates the performance of contact prediction servers. Currently, EVAcon is monitoring nine servers, four of which are specialized in contact prediction and five are general structure prediction servers. Results are compared for all newly det...
Autores principales: | , , , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2005
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160172/ https://www.ncbi.nlm.nih.gov/pubmed/15980486 http://dx.doi.org/10.1093/nar/gki411 |
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author | Graña, Osvaldo Eyrich, Volker A. Pazos, Florencio Rost, Burkhard Valencia, Alfonso |
author_facet | Graña, Osvaldo Eyrich, Volker A. Pazos, Florencio Rost, Burkhard Valencia, Alfonso |
author_sort | Graña, Osvaldo |
collection | PubMed |
description | Here we introduce EVAcon, an automated web service that evaluates the performance of contact prediction servers. Currently, EVAcon is monitoring nine servers, four of which are specialized in contact prediction and five are general structure prediction servers. Results are compared for all newly determined experimental structures deposited into PDB (∼5–50 per week). EVAcon allows for a precise comparison of the results based on a system of common protein subsets and the commonly accepted evaluation criteria that are also used in the corresponding category of the CASP assessment. EVAcon is a new service added to the functionality of the EVA system for the continuous evaluation of protein structure prediction servers. The new service is accesible from any of the three EVA mirrors: PDG (CNB-CSIC, Madrid) (); CUBIC (Columbia University, NYC) (); and Sali Lab (UCSF, San Francisco) (). |
format | Text |
id | pubmed-1160172 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2005 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-11601722005-06-29 EVAcon: a protein contact prediction evaluation service Graña, Osvaldo Eyrich, Volker A. Pazos, Florencio Rost, Burkhard Valencia, Alfonso Nucleic Acids Res Article Here we introduce EVAcon, an automated web service that evaluates the performance of contact prediction servers. Currently, EVAcon is monitoring nine servers, four of which are specialized in contact prediction and five are general structure prediction servers. Results are compared for all newly determined experimental structures deposited into PDB (∼5–50 per week). EVAcon allows for a precise comparison of the results based on a system of common protein subsets and the commonly accepted evaluation criteria that are also used in the corresponding category of the CASP assessment. EVAcon is a new service added to the functionality of the EVA system for the continuous evaluation of protein structure prediction servers. The new service is accesible from any of the three EVA mirrors: PDG (CNB-CSIC, Madrid) (); CUBIC (Columbia University, NYC) (); and Sali Lab (UCSF, San Francisco) (). Oxford University Press 2005-07-01 2005-06-27 /pmc/articles/PMC1160172/ /pubmed/15980486 http://dx.doi.org/10.1093/nar/gki411 Text en © The Author 2005. Published by Oxford University Press. All rights reserved |
spellingShingle | Article Graña, Osvaldo Eyrich, Volker A. Pazos, Florencio Rost, Burkhard Valencia, Alfonso EVAcon: a protein contact prediction evaluation service |
title | EVAcon: a protein contact prediction evaluation service |
title_full | EVAcon: a protein contact prediction evaluation service |
title_fullStr | EVAcon: a protein contact prediction evaluation service |
title_full_unstemmed | EVAcon: a protein contact prediction evaluation service |
title_short | EVAcon: a protein contact prediction evaluation service |
title_sort | evacon: a protein contact prediction evaluation service |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160172/ https://www.ncbi.nlm.nih.gov/pubmed/15980486 http://dx.doi.org/10.1093/nar/gki411 |
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