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EVAcon: a protein contact prediction evaluation service

Here we introduce EVAcon, an automated web service that evaluates the performance of contact prediction servers. Currently, EVAcon is monitoring nine servers, four of which are specialized in contact prediction and five are general structure prediction servers. Results are compared for all newly det...

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Detalles Bibliográficos
Autores principales: Graña, Osvaldo, Eyrich, Volker A., Pazos, Florencio, Rost, Burkhard, Valencia, Alfonso
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2005
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160172/
https://www.ncbi.nlm.nih.gov/pubmed/15980486
http://dx.doi.org/10.1093/nar/gki411
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author Graña, Osvaldo
Eyrich, Volker A.
Pazos, Florencio
Rost, Burkhard
Valencia, Alfonso
author_facet Graña, Osvaldo
Eyrich, Volker A.
Pazos, Florencio
Rost, Burkhard
Valencia, Alfonso
author_sort Graña, Osvaldo
collection PubMed
description Here we introduce EVAcon, an automated web service that evaluates the performance of contact prediction servers. Currently, EVAcon is monitoring nine servers, four of which are specialized in contact prediction and five are general structure prediction servers. Results are compared for all newly determined experimental structures deposited into PDB (∼5–50 per week). EVAcon allows for a precise comparison of the results based on a system of common protein subsets and the commonly accepted evaluation criteria that are also used in the corresponding category of the CASP assessment. EVAcon is a new service added to the functionality of the EVA system for the continuous evaluation of protein structure prediction servers. The new service is accesible from any of the three EVA mirrors: PDG (CNB-CSIC, Madrid) (); CUBIC (Columbia University, NYC) (); and Sali Lab (UCSF, San Francisco) ().
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spelling pubmed-11601722005-06-29 EVAcon: a protein contact prediction evaluation service Graña, Osvaldo Eyrich, Volker A. Pazos, Florencio Rost, Burkhard Valencia, Alfonso Nucleic Acids Res Article Here we introduce EVAcon, an automated web service that evaluates the performance of contact prediction servers. Currently, EVAcon is monitoring nine servers, four of which are specialized in contact prediction and five are general structure prediction servers. Results are compared for all newly determined experimental structures deposited into PDB (∼5–50 per week). EVAcon allows for a precise comparison of the results based on a system of common protein subsets and the commonly accepted evaluation criteria that are also used in the corresponding category of the CASP assessment. EVAcon is a new service added to the functionality of the EVA system for the continuous evaluation of protein structure prediction servers. The new service is accesible from any of the three EVA mirrors: PDG (CNB-CSIC, Madrid) (); CUBIC (Columbia University, NYC) (); and Sali Lab (UCSF, San Francisco) (). Oxford University Press 2005-07-01 2005-06-27 /pmc/articles/PMC1160172/ /pubmed/15980486 http://dx.doi.org/10.1093/nar/gki411 Text en © The Author 2005. Published by Oxford University Press. All rights reserved
spellingShingle Article
Graña, Osvaldo
Eyrich, Volker A.
Pazos, Florencio
Rost, Burkhard
Valencia, Alfonso
EVAcon: a protein contact prediction evaluation service
title EVAcon: a protein contact prediction evaluation service
title_full EVAcon: a protein contact prediction evaluation service
title_fullStr EVAcon: a protein contact prediction evaluation service
title_full_unstemmed EVAcon: a protein contact prediction evaluation service
title_short EVAcon: a protein contact prediction evaluation service
title_sort evacon: a protein contact prediction evaluation service
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160172/
https://www.ncbi.nlm.nih.gov/pubmed/15980486
http://dx.doi.org/10.1093/nar/gki411
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AT valenciaalfonso evaconaproteincontactpredictionevaluationservice