TargetIdentifier: a webserver for identifying full-length cDNAs from EST sequences

TargetIdentifier is a webserver that identifies full-length cDNA sequences from the expressed sequence tag (EST)-derived contig and singleton data. To accomplish this TargetIdentifier uses BLASTX alignments as a guide to locate protein coding regions and potential start and stop codons. This informa...

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Detalles Bibliográficos
Autores principales: Min, Xiang Jia, Butler, Gregory, Storms, Reginald, Tsang, Adrian
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2005
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160197/
https://www.ncbi.nlm.nih.gov/pubmed/15980559
http://dx.doi.org/10.1093/nar/gki436
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author Min, Xiang Jia
Butler, Gregory
Storms, Reginald
Tsang, Adrian
author_facet Min, Xiang Jia
Butler, Gregory
Storms, Reginald
Tsang, Adrian
author_sort Min, Xiang Jia
collection PubMed
description TargetIdentifier is a webserver that identifies full-length cDNA sequences from the expressed sequence tag (EST)-derived contig and singleton data. To accomplish this TargetIdentifier uses BLASTX alignments as a guide to locate protein coding regions and potential start and stop codons. This information is then used to determine whether the EST-derived sequences include their translation start codons. The algorithm also uses the BLASTX output to assign putative functions to the query sequences. The server is available at .
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spelling pubmed-11601972005-06-29 TargetIdentifier: a webserver for identifying full-length cDNAs from EST sequences Min, Xiang Jia Butler, Gregory Storms, Reginald Tsang, Adrian Nucleic Acids Res Article TargetIdentifier is a webserver that identifies full-length cDNA sequences from the expressed sequence tag (EST)-derived contig and singleton data. To accomplish this TargetIdentifier uses BLASTX alignments as a guide to locate protein coding regions and potential start and stop codons. This information is then used to determine whether the EST-derived sequences include their translation start codons. The algorithm also uses the BLASTX output to assign putative functions to the query sequences. The server is available at . Oxford University Press 2005-07-01 2005-06-27 /pmc/articles/PMC1160197/ /pubmed/15980559 http://dx.doi.org/10.1093/nar/gki436 Text en © The Author 2005. Published by Oxford University Press. All rights reserved
spellingShingle Article
Min, Xiang Jia
Butler, Gregory
Storms, Reginald
Tsang, Adrian
TargetIdentifier: a webserver for identifying full-length cDNAs from EST sequences
title TargetIdentifier: a webserver for identifying full-length cDNAs from EST sequences
title_full TargetIdentifier: a webserver for identifying full-length cDNAs from EST sequences
title_fullStr TargetIdentifier: a webserver for identifying full-length cDNAs from EST sequences
title_full_unstemmed TargetIdentifier: a webserver for identifying full-length cDNAs from EST sequences
title_short TargetIdentifier: a webserver for identifying full-length cDNAs from EST sequences
title_sort targetidentifier: a webserver for identifying full-length cdnas from est sequences
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160197/
https://www.ncbi.nlm.nih.gov/pubmed/15980559
http://dx.doi.org/10.1093/nar/gki436
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AT tsangadrian targetidentifierawebserverforidentifyingfulllengthcdnasfromestsequences

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