RibEx: a web server for locating riboswitches and other conserved bacterial regulatory elements

We present RibEx (riboswitch explorer), a web server capable of searching any sequence for known riboswitches as well as other predicted, but highly conserved, bacterial regulatory elements. It allows the visual inspection of the identified motifs in relation to attenuators and open reading frames (...

Descripción completa

Detalles Bibliográficos
Autores principales: Abreu-Goodger, Cei, Merino, Enrique
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2005
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160206/
https://www.ncbi.nlm.nih.gov/pubmed/15980564
http://dx.doi.org/10.1093/nar/gki445
_version_ 1782124379141832704
author Abreu-Goodger, Cei
Merino, Enrique
author_facet Abreu-Goodger, Cei
Merino, Enrique
author_sort Abreu-Goodger, Cei
collection PubMed
description We present RibEx (riboswitch explorer), a web server capable of searching any sequence for known riboswitches as well as other predicted, but highly conserved, bacterial regulatory elements. It allows the visual inspection of the identified motifs in relation to attenuators and open reading frames (ORFs). Any of the ORF's or regulatory elements' sequence can be obtained with a click and submitted to NCBI's BLAST. Alternatively, the genome context of all other genes regulated by the same element can be explored with our genome context tool (GeConT). RibEx is available at .
format Text
id pubmed-1160206
institution National Center for Biotechnology Information
language English
publishDate 2005
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-11602062005-06-29 RibEx: a web server for locating riboswitches and other conserved bacterial regulatory elements Abreu-Goodger, Cei Merino, Enrique Nucleic Acids Res Article We present RibEx (riboswitch explorer), a web server capable of searching any sequence for known riboswitches as well as other predicted, but highly conserved, bacterial regulatory elements. It allows the visual inspection of the identified motifs in relation to attenuators and open reading frames (ORFs). Any of the ORF's or regulatory elements' sequence can be obtained with a click and submitted to NCBI's BLAST. Alternatively, the genome context of all other genes regulated by the same element can be explored with our genome context tool (GeConT). RibEx is available at . Oxford University Press 2005-07-01 2005-06-27 /pmc/articles/PMC1160206/ /pubmed/15980564 http://dx.doi.org/10.1093/nar/gki445 Text en © The Author 2005. Published by Oxford University Press. All rights reserved
spellingShingle Article
Abreu-Goodger, Cei
Merino, Enrique
RibEx: a web server for locating riboswitches and other conserved bacterial regulatory elements
title RibEx: a web server for locating riboswitches and other conserved bacterial regulatory elements
title_full RibEx: a web server for locating riboswitches and other conserved bacterial regulatory elements
title_fullStr RibEx: a web server for locating riboswitches and other conserved bacterial regulatory elements
title_full_unstemmed RibEx: a web server for locating riboswitches and other conserved bacterial regulatory elements
title_short RibEx: a web server for locating riboswitches and other conserved bacterial regulatory elements
title_sort ribex: a web server for locating riboswitches and other conserved bacterial regulatory elements
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160206/
https://www.ncbi.nlm.nih.gov/pubmed/15980564
http://dx.doi.org/10.1093/nar/gki445
work_keys_str_mv AT abreugoodgercei ribexawebserverforlocatingriboswitchesandotherconservedbacterialregulatoryelements
AT merinoenrique ribexawebserverforlocatingriboswitchesandotherconservedbacterialregulatoryelements

Ejemplares similares