MINER: software for phylogenetic motif identification

MINER is web-based software for phylogenetic motif (PM) identification. PMs are sequence regions (fragments) that conserve the overall familial phylogeny. PMs have been shown to correspond to a wide variety of catalytic regions, substrate-binding sites and protein interfaces, making them ideal funct...

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Detalles Bibliográficos
Autores principales: La, David, Livesay, Dennis R.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2005
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160226/
https://www.ncbi.nlm.nih.gov/pubmed/15980467
http://dx.doi.org/10.1093/nar/gki465
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author La, David
Livesay, Dennis R.
author_facet La, David
Livesay, Dennis R.
author_sort La, David
collection PubMed
description MINER is web-based software for phylogenetic motif (PM) identification. PMs are sequence regions (fragments) that conserve the overall familial phylogeny. PMs have been shown to correspond to a wide variety of catalytic regions, substrate-binding sites and protein interfaces, making them ideal functional site predictions. The MINER output provides an intuitive interface for interactive PM sequence analysis and structural visualization. The web implementation of MINER is freely available at . Source code is available to the academic community on request.
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spelling pubmed-11602262005-06-29 MINER: software for phylogenetic motif identification La, David Livesay, Dennis R. Nucleic Acids Res Article MINER is web-based software for phylogenetic motif (PM) identification. PMs are sequence regions (fragments) that conserve the overall familial phylogeny. PMs have been shown to correspond to a wide variety of catalytic regions, substrate-binding sites and protein interfaces, making them ideal functional site predictions. The MINER output provides an intuitive interface for interactive PM sequence analysis and structural visualization. The web implementation of MINER is freely available at . Source code is available to the academic community on request. Oxford University Press 2005-07-01 2005-06-27 /pmc/articles/PMC1160226/ /pubmed/15980467 http://dx.doi.org/10.1093/nar/gki465 Text en © The Author 2005. Published by Oxford University Press. All rights reserved
spellingShingle Article
La, David
Livesay, Dennis R.
MINER: software for phylogenetic motif identification
title MINER: software for phylogenetic motif identification
title_full MINER: software for phylogenetic motif identification
title_fullStr MINER: software for phylogenetic motif identification
title_full_unstemmed MINER: software for phylogenetic motif identification
title_short MINER: software for phylogenetic motif identification
title_sort miner: software for phylogenetic motif identification
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160226/
https://www.ncbi.nlm.nih.gov/pubmed/15980467
http://dx.doi.org/10.1093/nar/gki465
work_keys_str_mv AT ladavid minersoftwareforphylogeneticmotifidentification
AT livesaydennisr minersoftwareforphylogeneticmotifidentification

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