The foldalign web server for pairwise structural RNA alignment and mutual motif search

Foldalign is a Sankoff-based algorithm for making structural alignments of RNA sequences. Here, we present a web server for making pairwise alignments between two RNA sequences, using the recently updated version of foldalign. The server can be used to scan two sequences for a common structural RNA...

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Detalles Bibliográficos
Autores principales: Havgaard, Jakob H., Lyngsø, Rune B., Gorodkin, Jan
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2005
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160234/
https://www.ncbi.nlm.nih.gov/pubmed/15980555
http://dx.doi.org/10.1093/nar/gki473
Descripción
Sumario:Foldalign is a Sankoff-based algorithm for making structural alignments of RNA sequences. Here, we present a web server for making pairwise alignments between two RNA sequences, using the recently updated version of foldalign. The server can be used to scan two sequences for a common structural RNA motif of limited size, or the entire sequences can be aligned locally or globally. The web server offers a graphical interface, which makes it simple to make alignments and manually browse the results. The web server can be accessed at .

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