The foldalign web server for pairwise structural RNA alignment and mutual motif search

Foldalign is a Sankoff-based algorithm for making structural alignments of RNA sequences. Here, we present a web server for making pairwise alignments between two RNA sequences, using the recently updated version of foldalign. The server can be used to scan two sequences for a common structural RNA...

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Detalles Bibliográficos
Autores principales: Havgaard, Jakob H., Lyngsø, Rune B., Gorodkin, Jan
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2005
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160234/
https://www.ncbi.nlm.nih.gov/pubmed/15980555
http://dx.doi.org/10.1093/nar/gki473
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author Havgaard, Jakob H.
Lyngsø, Rune B.
Gorodkin, Jan
author_facet Havgaard, Jakob H.
Lyngsø, Rune B.
Gorodkin, Jan
author_sort Havgaard, Jakob H.
collection PubMed
description Foldalign is a Sankoff-based algorithm for making structural alignments of RNA sequences. Here, we present a web server for making pairwise alignments between two RNA sequences, using the recently updated version of foldalign. The server can be used to scan two sequences for a common structural RNA motif of limited size, or the entire sequences can be aligned locally or globally. The web server offers a graphical interface, which makes it simple to make alignments and manually browse the results. The web server can be accessed at .
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spelling pubmed-11602342005-06-29 The foldalign web server for pairwise structural RNA alignment and mutual motif search Havgaard, Jakob H. Lyngsø, Rune B. Gorodkin, Jan Nucleic Acids Res Article Foldalign is a Sankoff-based algorithm for making structural alignments of RNA sequences. Here, we present a web server for making pairwise alignments between two RNA sequences, using the recently updated version of foldalign. The server can be used to scan two sequences for a common structural RNA motif of limited size, or the entire sequences can be aligned locally or globally. The web server offers a graphical interface, which makes it simple to make alignments and manually browse the results. The web server can be accessed at . Oxford University Press 2005-07-01 2005-06-27 /pmc/articles/PMC1160234/ /pubmed/15980555 http://dx.doi.org/10.1093/nar/gki473 Text en © The Author 2005. Published by Oxford University Press. All rights reserved
spellingShingle Article
Havgaard, Jakob H.
Lyngsø, Rune B.
Gorodkin, Jan
The foldalign web server for pairwise structural RNA alignment and mutual motif search
title The foldalign web server for pairwise structural RNA alignment and mutual motif search
title_full The foldalign web server for pairwise structural RNA alignment and mutual motif search
title_fullStr The foldalign web server for pairwise structural RNA alignment and mutual motif search
title_full_unstemmed The foldalign web server for pairwise structural RNA alignment and mutual motif search
title_short The foldalign web server for pairwise structural RNA alignment and mutual motif search
title_sort foldalign web server for pairwise structural rna alignment and mutual motif search
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160234/
https://www.ncbi.nlm.nih.gov/pubmed/15980555
http://dx.doi.org/10.1093/nar/gki473
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