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MovieMaker: a web server for rapid rendering of protein motions and interactions

MovieMaker is a web server that allows short (∼10 s), downloadable movies of protein motions to be generated. It accepts PDB files or PDB accession numbers as input and automatically calculates, renders and merges the necessary image files to create colourful animations covering a wide range of prot...

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Detalles Bibliográficos
Autores principales: Maiti, Rajarshi, Van Domselaar, Gary H., Wishart, David S.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2005
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160245/
https://www.ncbi.nlm.nih.gov/pubmed/15980488
http://dx.doi.org/10.1093/nar/gki485
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author Maiti, Rajarshi
Van Domselaar, Gary H.
Wishart, David S.
author_facet Maiti, Rajarshi
Van Domselaar, Gary H.
Wishart, David S.
author_sort Maiti, Rajarshi
collection PubMed
description MovieMaker is a web server that allows short (∼10 s), downloadable movies of protein motions to be generated. It accepts PDB files or PDB accession numbers as input and automatically calculates, renders and merges the necessary image files to create colourful animations covering a wide range of protein motions and other dynamic processes. Users have the option of animating (i) simple rotation, (ii) morphing between two end-state conformers, (iii) short-scale, picosecond vibrations, (iv) ligand docking, (v) protein oligomerization, (vi) mid-scale nanosecond (ensemble) motions and (vii) protein folding/unfolding. MovieMaker does not perform molecular dynamics calculations. Instead it is an animation tool that uses a sophisticated superpositioning algorithm in conjunction with Cartesian coordinate interpolation to rapidly and automatically calculate the intermediate structures needed for many of its animations. Users have extensive control over the rendering style, structure colour, animation quality, background and other image features. MovieMaker is intended to be a general-purpose server that allows both experts and non-experts to easily generate useful, informative protein animations for educational and illustrative purposes. MovieMaker is accessible at .
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spelling pubmed-11602452005-06-29 MovieMaker: a web server for rapid rendering of protein motions and interactions Maiti, Rajarshi Van Domselaar, Gary H. Wishart, David S. Nucleic Acids Res Article MovieMaker is a web server that allows short (∼10 s), downloadable movies of protein motions to be generated. It accepts PDB files or PDB accession numbers as input and automatically calculates, renders and merges the necessary image files to create colourful animations covering a wide range of protein motions and other dynamic processes. Users have the option of animating (i) simple rotation, (ii) morphing between two end-state conformers, (iii) short-scale, picosecond vibrations, (iv) ligand docking, (v) protein oligomerization, (vi) mid-scale nanosecond (ensemble) motions and (vii) protein folding/unfolding. MovieMaker does not perform molecular dynamics calculations. Instead it is an animation tool that uses a sophisticated superpositioning algorithm in conjunction with Cartesian coordinate interpolation to rapidly and automatically calculate the intermediate structures needed for many of its animations. Users have extensive control over the rendering style, structure colour, animation quality, background and other image features. MovieMaker is intended to be a general-purpose server that allows both experts and non-experts to easily generate useful, informative protein animations for educational and illustrative purposes. MovieMaker is accessible at . Oxford University Press 2005-07-01 2005-06-27 /pmc/articles/PMC1160245/ /pubmed/15980488 http://dx.doi.org/10.1093/nar/gki485 Text en © The Author 2005. Published by Oxford University Press. All rights reserved
spellingShingle Article
Maiti, Rajarshi
Van Domselaar, Gary H.
Wishart, David S.
MovieMaker: a web server for rapid rendering of protein motions and interactions
title MovieMaker: a web server for rapid rendering of protein motions and interactions
title_full MovieMaker: a web server for rapid rendering of protein motions and interactions
title_fullStr MovieMaker: a web server for rapid rendering of protein motions and interactions
title_full_unstemmed MovieMaker: a web server for rapid rendering of protein motions and interactions
title_short MovieMaker: a web server for rapid rendering of protein motions and interactions
title_sort moviemaker: a web server for rapid rendering of protein motions and interactions
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160245/
https://www.ncbi.nlm.nih.gov/pubmed/15980488
http://dx.doi.org/10.1093/nar/gki485
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