SCANMOT: searching for similar sequences using a simultaneous scan of multiple sequence motifs

Establishment of similarities between proteins is very important for the study of the relationship between sequence, structure and function and for the analysis of evolutionary relationships. Motif-based search methods play a crucial role in establishing the connections between proteins that are par...

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Detalles Bibliográficos
Autores principales: Chakrabarti, Saikat, Anand, A. Prem, Bhardwaj, Nitin, Pugalenthi, Ganesan, Sowdhamini, R.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2005
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160253/
https://www.ncbi.nlm.nih.gov/pubmed/15980468
http://dx.doi.org/10.1093/nar/gki493
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author Chakrabarti, Saikat
Anand, A. Prem
Bhardwaj, Nitin
Pugalenthi, Ganesan
Sowdhamini, R.
author_facet Chakrabarti, Saikat
Anand, A. Prem
Bhardwaj, Nitin
Pugalenthi, Ganesan
Sowdhamini, R.
author_sort Chakrabarti, Saikat
collection PubMed
description Establishment of similarities between proteins is very important for the study of the relationship between sequence, structure and function and for the analysis of evolutionary relationships. Motif-based search methods play a crucial role in establishing the connections between proteins that are particularly useful for distant relationships. This paper reports SCANMOT, a web-based server that searches for similarities between proteins by simultaneous matching of multiple motifs. SCANMOT searches for similar sequences in entire sequence databases using multiple conserved regions and utilizes inter-motif spacing as restraints. The SCANMOT server is available via .
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spelling pubmed-11602532005-06-29 SCANMOT: searching for similar sequences using a simultaneous scan of multiple sequence motifs Chakrabarti, Saikat Anand, A. Prem Bhardwaj, Nitin Pugalenthi, Ganesan Sowdhamini, R. Nucleic Acids Res Article Establishment of similarities between proteins is very important for the study of the relationship between sequence, structure and function and for the analysis of evolutionary relationships. Motif-based search methods play a crucial role in establishing the connections between proteins that are particularly useful for distant relationships. This paper reports SCANMOT, a web-based server that searches for similarities between proteins by simultaneous matching of multiple motifs. SCANMOT searches for similar sequences in entire sequence databases using multiple conserved regions and utilizes inter-motif spacing as restraints. The SCANMOT server is available via . Oxford University Press 2005-07-01 2005-06-27 /pmc/articles/PMC1160253/ /pubmed/15980468 http://dx.doi.org/10.1093/nar/gki493 Text en © The Author 2005. Published by Oxford University Press. All rights reserved
spellingShingle Article
Chakrabarti, Saikat
Anand, A. Prem
Bhardwaj, Nitin
Pugalenthi, Ganesan
Sowdhamini, R.
SCANMOT: searching for similar sequences using a simultaneous scan of multiple sequence motifs
title SCANMOT: searching for similar sequences using a simultaneous scan of multiple sequence motifs
title_full SCANMOT: searching for similar sequences using a simultaneous scan of multiple sequence motifs
title_fullStr SCANMOT: searching for similar sequences using a simultaneous scan of multiple sequence motifs
title_full_unstemmed SCANMOT: searching for similar sequences using a simultaneous scan of multiple sequence motifs
title_short SCANMOT: searching for similar sequences using a simultaneous scan of multiple sequence motifs
title_sort scanmot: searching for similar sequences using a simultaneous scan of multiple sequence motifs
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160253/
https://www.ncbi.nlm.nih.gov/pubmed/15980468
http://dx.doi.org/10.1093/nar/gki493
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