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POWER: PhylOgenetic WEb Repeater—an integrated and user-optimized framework for biomolecular phylogenetic analysis

POWER, the PhylOgenetic WEb Repeater, is a web-based service designed to perform user-friendly pipeline phylogenetic analysis. POWER uses an open-source LAMP structure and infers genetic distances and phylogenetic relationships using well-established algorithms (ClustalW and PHYLIP). POWER incorpora...

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Detalles Bibliográficos
Autores principales: Lin, Chung-Yen, Lin, Fan-Kai, Lin, Chieh Hua, Lai, Li-Wei, Hsu, Hsiu-Jun, Chen, Shu-Hwa, Hsiung, Chao A.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2005
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160254/
https://www.ncbi.nlm.nih.gov/pubmed/15980533
http://dx.doi.org/10.1093/nar/gki494
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author Lin, Chung-Yen
Lin, Fan-Kai
Lin, Chieh Hua
Lai, Li-Wei
Hsu, Hsiu-Jun
Chen, Shu-Hwa
Hsiung, Chao A.
author_facet Lin, Chung-Yen
Lin, Fan-Kai
Lin, Chieh Hua
Lai, Li-Wei
Hsu, Hsiu-Jun
Chen, Shu-Hwa
Hsiung, Chao A.
author_sort Lin, Chung-Yen
collection PubMed
description POWER, the PhylOgenetic WEb Repeater, is a web-based service designed to perform user-friendly pipeline phylogenetic analysis. POWER uses an open-source LAMP structure and infers genetic distances and phylogenetic relationships using well-established algorithms (ClustalW and PHYLIP). POWER incorporates a novel tree builder based on the GD library to generate a high-quality tree topology according to the calculated result. POWER accepts either raw sequences in FASTA format or user-uploaded alignment output files. Through a user-friendly web interface, users can sketch a tree effortlessly in multiple steps. After a tree has been generated, users can freely set and modify parameters, select tree building algorithms, refine sequence alignments or edit the tree topology. All the information related to input sequences and the processing history is logged and downloadable for the user's reference. Furthermore, iterative tree construction can be performed by adding sequences to, or removing them from, a previously submitted job. POWER is accessible at .
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spelling pubmed-11602542005-06-29 POWER: PhylOgenetic WEb Repeater—an integrated and user-optimized framework for biomolecular phylogenetic analysis Lin, Chung-Yen Lin, Fan-Kai Lin, Chieh Hua Lai, Li-Wei Hsu, Hsiu-Jun Chen, Shu-Hwa Hsiung, Chao A. Nucleic Acids Res Article POWER, the PhylOgenetic WEb Repeater, is a web-based service designed to perform user-friendly pipeline phylogenetic analysis. POWER uses an open-source LAMP structure and infers genetic distances and phylogenetic relationships using well-established algorithms (ClustalW and PHYLIP). POWER incorporates a novel tree builder based on the GD library to generate a high-quality tree topology according to the calculated result. POWER accepts either raw sequences in FASTA format or user-uploaded alignment output files. Through a user-friendly web interface, users can sketch a tree effortlessly in multiple steps. After a tree has been generated, users can freely set and modify parameters, select tree building algorithms, refine sequence alignments or edit the tree topology. All the information related to input sequences and the processing history is logged and downloadable for the user's reference. Furthermore, iterative tree construction can be performed by adding sequences to, or removing them from, a previously submitted job. POWER is accessible at . Oxford University Press 2005-07-01 2005-06-27 /pmc/articles/PMC1160254/ /pubmed/15980533 http://dx.doi.org/10.1093/nar/gki494 Text en © The Author 2005. Published by Oxford University Press. All rights reserved
spellingShingle Article
Lin, Chung-Yen
Lin, Fan-Kai
Lin, Chieh Hua
Lai, Li-Wei
Hsu, Hsiu-Jun
Chen, Shu-Hwa
Hsiung, Chao A.
POWER: PhylOgenetic WEb Repeater—an integrated and user-optimized framework for biomolecular phylogenetic analysis
title POWER: PhylOgenetic WEb Repeater—an integrated and user-optimized framework for biomolecular phylogenetic analysis
title_full POWER: PhylOgenetic WEb Repeater—an integrated and user-optimized framework for biomolecular phylogenetic analysis
title_fullStr POWER: PhylOgenetic WEb Repeater—an integrated and user-optimized framework for biomolecular phylogenetic analysis
title_full_unstemmed POWER: PhylOgenetic WEb Repeater—an integrated and user-optimized framework for biomolecular phylogenetic analysis
title_short POWER: PhylOgenetic WEb Repeater—an integrated and user-optimized framework for biomolecular phylogenetic analysis
title_sort power: phylogenetic web repeater—an integrated and user-optimized framework for biomolecular phylogenetic analysis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160254/
https://www.ncbi.nlm.nih.gov/pubmed/15980533
http://dx.doi.org/10.1093/nar/gki494
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