The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging

The Open Microscopy Environment (OME) defines a data model and a software implementation to serve as an informatics framework for imaging in biological microscopy experiments, including representation of acquisition parameters, annotations and image analysis results. OME is designed to support high-...

Descripción completa

Detalles Bibliográficos
Autores principales: Goldberg, Ilya G, Allan, Chris, Burel, Jean-Marie, Creager, Doug, Falconi, Andrea, Hochheiser, Harry, Johnston, Josiah, Mellen, Jeff, Sorger, Peter K, Swedlow, Jason R
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2005
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1175959/
https://www.ncbi.nlm.nih.gov/pubmed/15892875
http://dx.doi.org/10.1186/gb-2005-6-5-r47
_version_ 1782124550100615168
author Goldberg, Ilya G
Allan, Chris
Burel, Jean-Marie
Creager, Doug
Falconi, Andrea
Hochheiser, Harry
Johnston, Josiah
Mellen, Jeff
Sorger, Peter K
Swedlow, Jason R
author_facet Goldberg, Ilya G
Allan, Chris
Burel, Jean-Marie
Creager, Doug
Falconi, Andrea
Hochheiser, Harry
Johnston, Josiah
Mellen, Jeff
Sorger, Peter K
Swedlow, Jason R
author_sort Goldberg, Ilya G
collection PubMed
description The Open Microscopy Environment (OME) defines a data model and a software implementation to serve as an informatics framework for imaging in biological microscopy experiments, including representation of acquisition parameters, annotations and image analysis results. OME is designed to support high-content cell-based screening as well as traditional image analysis applications. The OME Data Model, expressed in Extensible Markup Language (XML) and realized in a traditional database, is both extensible and self-describing, allowing it to meet emerging imaging and analysis needs.
format Text
id pubmed-1175959
institution National Center for Biotechnology Information
language English
publishDate 2005
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-11759592005-07-17 The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging Goldberg, Ilya G Allan, Chris Burel, Jean-Marie Creager, Doug Falconi, Andrea Hochheiser, Harry Johnston, Josiah Mellen, Jeff Sorger, Peter K Swedlow, Jason R Genome Biol Software The Open Microscopy Environment (OME) defines a data model and a software implementation to serve as an informatics framework for imaging in biological microscopy experiments, including representation of acquisition parameters, annotations and image analysis results. OME is designed to support high-content cell-based screening as well as traditional image analysis applications. The OME Data Model, expressed in Extensible Markup Language (XML) and realized in a traditional database, is both extensible and self-describing, allowing it to meet emerging imaging and analysis needs. BioMed Central 2005 2005-05-03 /pmc/articles/PMC1175959/ /pubmed/15892875 http://dx.doi.org/10.1186/gb-2005-6-5-r47 Text en Copyright © 2005 Goldberg et al.; licensee BioMed Central Ltd.
spellingShingle Software
Goldberg, Ilya G
Allan, Chris
Burel, Jean-Marie
Creager, Doug
Falconi, Andrea
Hochheiser, Harry
Johnston, Josiah
Mellen, Jeff
Sorger, Peter K
Swedlow, Jason R
The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging
title The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging
title_full The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging
title_fullStr The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging
title_full_unstemmed The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging
title_short The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging
title_sort open microscopy environment (ome) data model and xml file: open tools for informatics and quantitative analysis in biological imaging
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1175959/
https://www.ncbi.nlm.nih.gov/pubmed/15892875
http://dx.doi.org/10.1186/gb-2005-6-5-r47
work_keys_str_mv AT goldbergilyag theopenmicroscopyenvironmentomedatamodelandxmlfileopentoolsforinformaticsandquantitativeanalysisinbiologicalimaging
AT allanchris theopenmicroscopyenvironmentomedatamodelandxmlfileopentoolsforinformaticsandquantitativeanalysisinbiologicalimaging
AT bureljeanmarie theopenmicroscopyenvironmentomedatamodelandxmlfileopentoolsforinformaticsandquantitativeanalysisinbiologicalimaging
AT creagerdoug theopenmicroscopyenvironmentomedatamodelandxmlfileopentoolsforinformaticsandquantitativeanalysisinbiologicalimaging
AT falconiandrea theopenmicroscopyenvironmentomedatamodelandxmlfileopentoolsforinformaticsandquantitativeanalysisinbiologicalimaging
AT hochheiserharry theopenmicroscopyenvironmentomedatamodelandxmlfileopentoolsforinformaticsandquantitativeanalysisinbiologicalimaging
AT johnstonjosiah theopenmicroscopyenvironmentomedatamodelandxmlfileopentoolsforinformaticsandquantitativeanalysisinbiologicalimaging
AT mellenjeff theopenmicroscopyenvironmentomedatamodelandxmlfileopentoolsforinformaticsandquantitativeanalysisinbiologicalimaging
AT sorgerpeterk theopenmicroscopyenvironmentomedatamodelandxmlfileopentoolsforinformaticsandquantitativeanalysisinbiologicalimaging
AT swedlowjasonr theopenmicroscopyenvironmentomedatamodelandxmlfileopentoolsforinformaticsandquantitativeanalysisinbiologicalimaging
AT goldbergilyag openmicroscopyenvironmentomedatamodelandxmlfileopentoolsforinformaticsandquantitativeanalysisinbiologicalimaging
AT allanchris openmicroscopyenvironmentomedatamodelandxmlfileopentoolsforinformaticsandquantitativeanalysisinbiologicalimaging
AT bureljeanmarie openmicroscopyenvironmentomedatamodelandxmlfileopentoolsforinformaticsandquantitativeanalysisinbiologicalimaging
AT creagerdoug openmicroscopyenvironmentomedatamodelandxmlfileopentoolsforinformaticsandquantitativeanalysisinbiologicalimaging
AT falconiandrea openmicroscopyenvironmentomedatamodelandxmlfileopentoolsforinformaticsandquantitativeanalysisinbiologicalimaging
AT hochheiserharry openmicroscopyenvironmentomedatamodelandxmlfileopentoolsforinformaticsandquantitativeanalysisinbiologicalimaging
AT johnstonjosiah openmicroscopyenvironmentomedatamodelandxmlfileopentoolsforinformaticsandquantitativeanalysisinbiologicalimaging
AT mellenjeff openmicroscopyenvironmentomedatamodelandxmlfileopentoolsforinformaticsandquantitativeanalysisinbiologicalimaging
AT sorgerpeterk openmicroscopyenvironmentomedatamodelandxmlfileopentoolsforinformaticsandquantitativeanalysisinbiologicalimaging
AT swedlowjasonr openmicroscopyenvironmentomedatamodelandxmlfileopentoolsforinformaticsandquantitativeanalysisinbiologicalimaging

Ejemplares similares