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Inflammatory Aetiology of Human Myometrial Activation Tested Using Directed Graphs
There are three main hypotheses for the activation of the human uterus at labour: functional progesterone withdrawal, inflammatory stimulation, and oxytocin receptor activation. To test these alternatives we have taken information and data from the literature to develop causal pathway models for the...
Autores principales: | , , , , , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2005
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1185645/ https://www.ncbi.nlm.nih.gov/pubmed/16110333 http://dx.doi.org/10.1371/journal.pcbi.0010019 |
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author | Bisits, Andrew M Smith, Roger Mesiano, Sam Yeo, George Kwek, Kenneth MacIntyre, David Chan, Eng C |
author_facet | Bisits, Andrew M Smith, Roger Mesiano, Sam Yeo, George Kwek, Kenneth MacIntyre, David Chan, Eng C |
author_sort | Bisits, Andrew M |
collection | PubMed |
description | There are three main hypotheses for the activation of the human uterus at labour: functional progesterone withdrawal, inflammatory stimulation, and oxytocin receptor activation. To test these alternatives we have taken information and data from the literature to develop causal pathway models for the activation of human myometrium. The data provided quantitative RT-PCR results on key genes from samples taken before and during labour. Principal component analysis showed that pre-labour samples form a homogenous group compared to those during labour. We therefore modelled the alternative causal pathways in non-labouring samples using directed graphs and statistically compared the likelihood of the different models using structural equations and D-separation approaches. Using the computer program LISREL, inflammatory activation as a primary event was highly consistent with the data (p = 0.925), progesterone withdrawal, as a primary event, is plausible (p = 0.499), yet comparatively unlikely, oxytocin receptor mediated initiation is less compatible with the data (p = 0.091). DGraph, a software program that creates directed graphs, produced similar results (p = 0.684, p = 0.280, and p = 0.04, respectively). This outcome supports an inflammatory aetiology for human labour. Our results demonstrate the value of directed graphs in determining the likelihood of causal relationships in biology in situations where experiments are not possible. |
format | Text |
id | pubmed-1185645 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2005 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-11856452005-08-17 Inflammatory Aetiology of Human Myometrial Activation Tested Using Directed Graphs Bisits, Andrew M Smith, Roger Mesiano, Sam Yeo, George Kwek, Kenneth MacIntyre, David Chan, Eng C PLoS Comput Biol Research Article There are three main hypotheses for the activation of the human uterus at labour: functional progesterone withdrawal, inflammatory stimulation, and oxytocin receptor activation. To test these alternatives we have taken information and data from the literature to develop causal pathway models for the activation of human myometrium. The data provided quantitative RT-PCR results on key genes from samples taken before and during labour. Principal component analysis showed that pre-labour samples form a homogenous group compared to those during labour. We therefore modelled the alternative causal pathways in non-labouring samples using directed graphs and statistically compared the likelihood of the different models using structural equations and D-separation approaches. Using the computer program LISREL, inflammatory activation as a primary event was highly consistent with the data (p = 0.925), progesterone withdrawal, as a primary event, is plausible (p = 0.499), yet comparatively unlikely, oxytocin receptor mediated initiation is less compatible with the data (p = 0.091). DGraph, a software program that creates directed graphs, produced similar results (p = 0.684, p = 0.280, and p = 0.04, respectively). This outcome supports an inflammatory aetiology for human labour. Our results demonstrate the value of directed graphs in determining the likelihood of causal relationships in biology in situations where experiments are not possible. Public Library of Science 2005-07 2005-07-22 /pmc/articles/PMC1185645/ /pubmed/16110333 http://dx.doi.org/10.1371/journal.pcbi.0010019 Text en Copyright: © 2005 Bisits et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Bisits, Andrew M Smith, Roger Mesiano, Sam Yeo, George Kwek, Kenneth MacIntyre, David Chan, Eng C Inflammatory Aetiology of Human Myometrial Activation Tested Using Directed Graphs |
title | Inflammatory Aetiology of Human Myometrial Activation Tested Using Directed Graphs |
title_full | Inflammatory Aetiology of Human Myometrial Activation Tested Using Directed Graphs |
title_fullStr | Inflammatory Aetiology of Human Myometrial Activation Tested Using Directed Graphs |
title_full_unstemmed | Inflammatory Aetiology of Human Myometrial Activation Tested Using Directed Graphs |
title_short | Inflammatory Aetiology of Human Myometrial Activation Tested Using Directed Graphs |
title_sort | inflammatory aetiology of human myometrial activation tested using directed graphs |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1185645/ https://www.ncbi.nlm.nih.gov/pubmed/16110333 http://dx.doi.org/10.1371/journal.pcbi.0010019 |
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