Cargando…

Sources of variation in Affymetrix microarray experiments

BACKGROUND: A typical microarray experiment has many sources of variation which can be attributed to biological and technical causes. Identifying sources of variation and assessing their magnitude, among other factors, are important for optimal experimental design. The objectives of this study were:...

Descripción completa

Detalles Bibliográficos
Autores principales:	Zakharkin, Stanislav O, Kim, Kyoungmi, Mehta, Tapan, Chen, Lang, Barnes, Stephen, Scheirer, Katherine E, Parrish, Rudolph S, Allison, David B, Page, Grier P
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2005
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1232851/ https://www.ncbi.nlm.nih.gov/pubmed/16124883 http://dx.doi.org/10.1186/1471-2105-6-214

Ejemplares similares

A proposed metric for assessing the measurement quality of individual microarrays
por: Kim, Kyoungmi, et al.
Publicado: (2006)

Optimal Allocation of Replicates for Measurement Evaluation Studies
por: Zakharkin, Stanislav O., et al.
Publicado: (2006)

Combining Affymetrix microarray results
por: Stevens, John R, et al.
Publicado: (2005)

HDBStat!: A platform-independent software suite for statistical analysis of high dimensional biology data
por: Trivedi, Prinal, et al.
Publicado: (2005)

Computational method for reducing variance with Affymetrix microarrays
por: Welle, Stephen, et al.
Publicado: (2002)

An adaptive alpha spending algorithm improves the power of statistical inference in microarray data analysis
por: Brand, Jacob P L, et al.
Publicado: (2007)

Sources of High Variance between Probe Signals in Affymetrix Short Oligonucleotide Microarrays
por: Jaksik, Roman, et al.
Publicado: (2013)

Relative impact of key sources of systematic noise in Affymetrix and Illumina gene-expression microarray experiments
por: Kitchen, Robert R, et al.
Publicado: (2011)

Assessing affymetrix GeneChip microarray quality
por: McCall, Matthew N, et al.
Publicado: (2011)

Equalizer reduces SNP bias in Affymetrix microarrays
por: Quigley, David
Publicado: (2015)

Celsius: a community resource for Affymetrix microarray data
por: Day, Allen, et al.
Publicado: (2007)

Analysis of probe level patterns in Affymetrix microarray data
por: Cambon, Alexander C, et al.
Publicado: (2007)

Reproducibility of gene expression across generations of Affymetrix microarrays
por: Nimgaonkar, Ashish, et al.
Publicado: (2003)

Meta-Analysis Combines Affymetrix Microarray Results Across Laboratories
por: Stevens, John R., et al.
Publicado: (2005)

Methods for evaluating gene expression from Affymetrix microarray datasets
por: Jiang, Ning, et al.
Publicado: (2008)

Towards the uniform distribution of null P values on Affymetrix microarrays
por: Fodor, Anthony A, et al.
Publicado: (2007)

G-spots cause incorrect expression measurement in Affymetrix microarrays
por: Upton, Graham JG, et al.
Publicado: (2008)

Validation and extension of an empirical Bayes method for SNP calling on Affymetrix microarrays
por: Lin, Shin, et al.
Publicado: (2008)

Microarray labeling extension values: laboratory signatures for Affymetrix GeneChips
por: Lee, Yun-Shien, et al.
Publicado: (2009)

PLANdbAffy: probe-level annotation database for Affymetrix expression microarrays
por: Nurtdinov, Ramil N., et al.
Publicado: (2010)

An end to end workflow for differential gene expression using Affymetrix microarrays
por: Klaus, Bernd, et al.
Publicado: (2018)

Correlation of microRNA levels during hypoxia with predicted target mRNAs through genome-wide microarray analysis
por: Guimbellot, Jennifer S, et al.
Publicado: (2009)

Many Microbe Microarrays Database: uniformly normalized Affymetrix compendia with structured experimental metadata
por: Faith, Jeremiah J., et al.
Publicado: (2008)

MAAMD: a workflow to standardize meta-analyses and comparison of affymetrix microarray data
por: Gan, Zhuohui, et al.
Publicado: (2014)

A new method for class prediction based on signed-rank algorithms applied to Affymetrix(® )microarray experiments
por: Rème, Thierry, et al.
Publicado: (2008)

nuID: a universal naming scheme of oligonucleotides for Illumina, Affymetrix, and other microarrays
por: Du, Pan, et al.
Publicado: (2007)

affyPara—a Bioconductor Package for Parallelized Preprocessing Algorithms of Affymetrix Microarray Data
por: Schmidberger, Markus, et al.
Publicado: (2009)

Analysis of discordant Affymetrix probesets casts serious doubt on idea of microarray data reutilization
por: Marakhonov, Andrey, et al.
Publicado: (2014)

Transformation of expression intensities across generations of Affymetrix microarrays using sequence matching and regression modeling
por: Bhattacharya, Soumyaroop, et al.
Publicado: (2005)

Comparison of algorithms for the analysis of Affymetrix microarray data as evaluated by co-expression of genes in known operons
por: Harr, Bettina, et al.
Publicado: (2006)

Utility of the pooling approach as applied to whole genome association scans with high-density Affymetrix microarrays
por: Schosser, Alexandra, et al.
Publicado: (2010)

Reproducible Clusters from Microarray Research: Whither?
por: Garge, Nikhil R, et al.
Publicado: (2005)

Gene Expression and Isoform Variation Analysis using Affymetrix Exon Arrays
por: Bemmo, Amandine, et al.
Publicado: (2008)

Gene expression and isoform variation analysis using Affymetrix exon arrays
por: Bemmo, Amandine, et al.
Publicado: (2009)

SNiPer: Improved SNP genotype calling for Affymetrix 10K GeneChip microarray data
por: Huentelman, Matthew J, et al.
Publicado: (2005)

A robust method for estimating gene expression states using Affymetrix microarray probe level data
por: Ohtaki, Megu, et al.
Publicado: (2010)

GCSscore: an R package for differential gene expression analysis in Affymetrix/Thermo-Fisher whole transcriptome microarrays
por: Harris, Guy M., et al.
Publicado: (2021)

Bioinformatic Tools for Inferring Functional Information from Plant Microarray Data: Tools for the First Steps
por: Page, Grier P., et al.
Publicado: (2008)

Direct integration of intensity-level data from Affymetrix and Illumina microarrays improves statistical power for robust reanalysis
por: Turnbull, Arran K, et al.
Publicado: (2012)

Bioinformatic Tools for Inferring Functional Information from Plant Microarray Data II: Analysis Beyond Single Gene
por: Coulibaly, Issa, et al.
Publicado: (2008)

Cannot write session to /tmp/vufind_sessions/sess_4a8k0llnee0nofg6da6iehm82r