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Dynamic Properties of Network Motifs Contribute to Biological Network Organization
Biological networks, such as those describing gene regulation, signal transduction, and neural synapses, are representations of large-scale dynamic systems. Discovery of organizing principles of biological networks can be enhanced by embracing the notion that there is a deep interplay between networ...
Autores principales: | , , |
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Formato: | Texto |
Lenguaje: | English |
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Public Library of Science
2005
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1239925/ https://www.ncbi.nlm.nih.gov/pubmed/16187794 http://dx.doi.org/10.1371/journal.pbio.0030343 |
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author | Prill, Robert J Iglesias, Pablo A Levchenko, Andre |
author_facet | Prill, Robert J Iglesias, Pablo A Levchenko, Andre |
author_sort | Prill, Robert J |
collection | PubMed |
description | Biological networks, such as those describing gene regulation, signal transduction, and neural synapses, are representations of large-scale dynamic systems. Discovery of organizing principles of biological networks can be enhanced by embracing the notion that there is a deep interplay between network structure and system dynamics. Recently, many structural characteristics of these non-random networks have been identified, but dynamical implications of the features have not been explored comprehensively. We demonstrate by exhaustive computational analysis that a dynamical property—stability or robustness to small perturbations—is highly correlated with the relative abundance of small subnetworks (network motifs) in several previously determined biological networks. We propose that robust dynamical stability is an influential property that can determine the non-random structure of biological networks. |
format | Text |
id | pubmed-1239925 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2005 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-12399252005-10-04 Dynamic Properties of Network Motifs Contribute to Biological Network Organization Prill, Robert J Iglesias, Pablo A Levchenko, Andre PLoS Biol Research Article Biological networks, such as those describing gene regulation, signal transduction, and neural synapses, are representations of large-scale dynamic systems. Discovery of organizing principles of biological networks can be enhanced by embracing the notion that there is a deep interplay between network structure and system dynamics. Recently, many structural characteristics of these non-random networks have been identified, but dynamical implications of the features have not been explored comprehensively. We demonstrate by exhaustive computational analysis that a dynamical property—stability or robustness to small perturbations—is highly correlated with the relative abundance of small subnetworks (network motifs) in several previously determined biological networks. We propose that robust dynamical stability is an influential property that can determine the non-random structure of biological networks. Public Library of Science 2005-11 2005-10-04 /pmc/articles/PMC1239925/ /pubmed/16187794 http://dx.doi.org/10.1371/journal.pbio.0030343 Text en Copyright: © 2005 Prill et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Prill, Robert J Iglesias, Pablo A Levchenko, Andre Dynamic Properties of Network Motifs Contribute to Biological Network Organization |
title | Dynamic Properties of Network Motifs Contribute to Biological Network Organization |
title_full | Dynamic Properties of Network Motifs Contribute to Biological Network Organization |
title_fullStr | Dynamic Properties of Network Motifs Contribute to Biological Network Organization |
title_full_unstemmed | Dynamic Properties of Network Motifs Contribute to Biological Network Organization |
title_short | Dynamic Properties of Network Motifs Contribute to Biological Network Organization |
title_sort | dynamic properties of network motifs contribute to biological network organization |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1239925/ https://www.ncbi.nlm.nih.gov/pubmed/16187794 http://dx.doi.org/10.1371/journal.pbio.0030343 |
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