Cargando…

Dynamic Properties of Network Motifs Contribute to Biological Network Organization

Biological networks, such as those describing gene regulation, signal transduction, and neural synapses, are representations of large-scale dynamic systems. Discovery of organizing principles of biological networks can be enhanced by embracing the notion that there is a deep interplay between networ...

Descripción completa

Detalles Bibliográficos
Autores principales: Prill, Robert J, Iglesias, Pablo A, Levchenko, Andre
Formato: Texto
Lenguaje:English
Publicado: Public Library of Science 2005
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1239925/
https://www.ncbi.nlm.nih.gov/pubmed/16187794
http://dx.doi.org/10.1371/journal.pbio.0030343
_version_ 1782125035330207744
author Prill, Robert J
Iglesias, Pablo A
Levchenko, Andre
author_facet Prill, Robert J
Iglesias, Pablo A
Levchenko, Andre
author_sort Prill, Robert J
collection PubMed
description Biological networks, such as those describing gene regulation, signal transduction, and neural synapses, are representations of large-scale dynamic systems. Discovery of organizing principles of biological networks can be enhanced by embracing the notion that there is a deep interplay between network structure and system dynamics. Recently, many structural characteristics of these non-random networks have been identified, but dynamical implications of the features have not been explored comprehensively. We demonstrate by exhaustive computational analysis that a dynamical property—stability or robustness to small perturbations—is highly correlated with the relative abundance of small subnetworks (network motifs) in several previously determined biological networks. We propose that robust dynamical stability is an influential property that can determine the non-random structure of biological networks.
format Text
id pubmed-1239925
institution National Center for Biotechnology Information
language English
publishDate 2005
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-12399252005-10-04 Dynamic Properties of Network Motifs Contribute to Biological Network Organization Prill, Robert J Iglesias, Pablo A Levchenko, Andre PLoS Biol Research Article Biological networks, such as those describing gene regulation, signal transduction, and neural synapses, are representations of large-scale dynamic systems. Discovery of organizing principles of biological networks can be enhanced by embracing the notion that there is a deep interplay between network structure and system dynamics. Recently, many structural characteristics of these non-random networks have been identified, but dynamical implications of the features have not been explored comprehensively. We demonstrate by exhaustive computational analysis that a dynamical property—stability or robustness to small perturbations—is highly correlated with the relative abundance of small subnetworks (network motifs) in several previously determined biological networks. We propose that robust dynamical stability is an influential property that can determine the non-random structure of biological networks. Public Library of Science 2005-11 2005-10-04 /pmc/articles/PMC1239925/ /pubmed/16187794 http://dx.doi.org/10.1371/journal.pbio.0030343 Text en Copyright: © 2005 Prill et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Prill, Robert J
Iglesias, Pablo A
Levchenko, Andre
Dynamic Properties of Network Motifs Contribute to Biological Network Organization
title Dynamic Properties of Network Motifs Contribute to Biological Network Organization
title_full Dynamic Properties of Network Motifs Contribute to Biological Network Organization
title_fullStr Dynamic Properties of Network Motifs Contribute to Biological Network Organization
title_full_unstemmed Dynamic Properties of Network Motifs Contribute to Biological Network Organization
title_short Dynamic Properties of Network Motifs Contribute to Biological Network Organization
title_sort dynamic properties of network motifs contribute to biological network organization
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1239925/
https://www.ncbi.nlm.nih.gov/pubmed/16187794
http://dx.doi.org/10.1371/journal.pbio.0030343
work_keys_str_mv AT prillrobertj dynamicpropertiesofnetworkmotifscontributetobiologicalnetworkorganization
AT iglesiaspabloa dynamicpropertiesofnetworkmotifscontributetobiologicalnetworkorganization
AT levchenkoandre dynamicpropertiesofnetworkmotifscontributetobiologicalnetworkorganization