PubNet: a flexible system for visualizing literature derived networks

We have developed PubNet, a web-based tool that extracts several types of relationships returned by PubMed queries and maps them into networks, allowing for graphical visualization, textual navigation, and topological analysis. PubNet supports the creation of complex networks derived from the conten...

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Detalles Bibliográficos
Autores principales: Douglas, Shawn M, Montelione, Gaetano T, Gerstein, Mark
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2005
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1242215/
https://www.ncbi.nlm.nih.gov/pubmed/16168087
http://dx.doi.org/10.1186/gb-2005-6-9-r80
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author Douglas, Shawn M
Montelione, Gaetano T
Gerstein, Mark
author_facet Douglas, Shawn M
Montelione, Gaetano T
Gerstein, Mark
author_sort Douglas, Shawn M
collection PubMed
description We have developed PubNet, a web-based tool that extracts several types of relationships returned by PubMed queries and maps them into networks, allowing for graphical visualization, textual navigation, and topological analysis. PubNet supports the creation of complex networks derived from the contents of individual citations, such as genes, proteins, Protein Data Bank (PDB) IDs, Medical Subject Headings (MeSH) terms, and authors. This feature allows one to, for example, examine a literature derived network of genes based on functional similarity.
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spelling pubmed-12422152005-10-06 PubNet: a flexible system for visualizing literature derived networks Douglas, Shawn M Montelione, Gaetano T Gerstein, Mark Genome Biol Software We have developed PubNet, a web-based tool that extracts several types of relationships returned by PubMed queries and maps them into networks, allowing for graphical visualization, textual navigation, and topological analysis. PubNet supports the creation of complex networks derived from the contents of individual citations, such as genes, proteins, Protein Data Bank (PDB) IDs, Medical Subject Headings (MeSH) terms, and authors. This feature allows one to, for example, examine a literature derived network of genes based on functional similarity. BioMed Central 2005 2005-08-16 /pmc/articles/PMC1242215/ /pubmed/16168087 http://dx.doi.org/10.1186/gb-2005-6-9-r80 Text en Copyright © 2005 Douglas et al.; licensee BioMed Central Ltd.
spellingShingle Software
Douglas, Shawn M
Montelione, Gaetano T
Gerstein, Mark
PubNet: a flexible system for visualizing literature derived networks
title PubNet: a flexible system for visualizing literature derived networks
title_full PubNet: a flexible system for visualizing literature derived networks
title_fullStr PubNet: a flexible system for visualizing literature derived networks
title_full_unstemmed PubNet: a flexible system for visualizing literature derived networks
title_short PubNet: a flexible system for visualizing literature derived networks
title_sort pubnet: a flexible system for visualizing literature derived networks
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1242215/
https://www.ncbi.nlm.nih.gov/pubmed/16168087
http://dx.doi.org/10.1186/gb-2005-6-9-r80
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