Cargando…

SNPdetector: A Software Tool for Sensitive and Accurate SNP Detection

Identification of single nucleotide polymorphisms (SNPs) and mutations is important for the discovery of genetic predisposition to complex diseases. PCR resequencing is the method of choice for de novo SNP discovery. However, manual curation of putative SNPs has been a major bottleneck in the applic...

Descripción completa

Detalles Bibliográficos
Autores principales:	Zhang, Jinghui, Wheeler, David A, Yakub, Imtiaz, Wei, Sharon, Sood, Raman, Rowe, William, Liu, Paul P, Gibbs, Richard A, Buetow, Kenneth H
Formato:	Texto
Lenguaje:	English
Publicado:	Public Library of Science 2005
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1274293/ https://www.ncbi.nlm.nih.gov/pubmed/16261194 http://dx.doi.org/10.1371/journal.pcbi.0010053

Ejemplares similares

Pathways of Distinction Analysis: A New Technique for Multi–SNP Analysis of GWAS Data
por: Braun, Rosemary, et al.
Publicado: (2011)

Needles in the Haystack: Identifying Individuals Present in Pooled Genomic Data
por: Braun, Rosemary, et al.
Publicado: (2009)

Gene functional similarity search tool (GFSST)
por: Zhang, Peisen, et al.
Publicado: (2006)

Heap: a highly sensitive and accurate SNP detection tool for low-coverage high-throughput sequencing data
por: Kobayashi, Masaaki, et al.
Publicado: (2017)

mrSNP: Software to detect SNP effects on microRNA binding
por: Deveci, Mehmet, et al.
Publicado: (2014)

Seq4SNPs: new software for retrieval of multiple, accurately annotated DNA sequences, ready formatted for SNP assay design
por: Field, Helen I, et al.
Publicado: (2009)

An Accurate FFPA-PSR Estimator Algorithm and Tool for Software Effort Estimation
por: Murugesan, Senthil Kumar, et al.
Publicado: (2015)

SNP-VISTA: An interactive SNP visualization tool
por: Shah, Nameeta, et al.
Publicado: (2005)

KinSNP software for homozygosity mapping of disease genes using SNP microarrays
por: Amir, El-Ad David, et al.
Publicado: (2010)

MapNext: a software tool for spliced and unspliced alignments and SNP detection of short sequence reads
por: Bao, Hua, et al.
Publicado: (2009)

Fast accurate missing SNP genotype local imputation
por: Wang, Yining, et al.
Publicado: (2012)

Multi-SNP Analysis of GWAS Data Identifies Pathways Associated with Nonalcoholic Fatty Liver Disease
por: Chen, Qing-Rong, et al.
Publicado: (2013)

Fresh is best: Accurate SNP genotyping from koala scats
por: Schultz, Anthony J., et al.
Publicado: (2018)

ProViDE: A software tool for accurate estimation of viral diversity in metagenomic samples
por: Ghosh, Tarini Shankar, et al.
Publicado: (2011)

High sample throughput genotyping for estimating C-lineage introgression in the dark honeybee: an accurate and cost-effective SNP-based tool
por: Henriques, Dora, et al.
Publicado: (2018)

The PathOlogist: an automated tool for pathway-centric analysis
por: Greenblum, Sharon I, et al.
Publicado: (2011)

Rapid and accurate SNP genotyping of clonal bacterial pathogens with BioHansel
por: Labbé, Geneviève, et al.
Publicado: (2021)

Software-defined cloud centers: operational and management technologies and tools
por: Raj, Pethuru, et al.
Publicado: (2018)

SNP-CRISPR: A Web Tool for SNP-Specific Genome Editing
por: Chen, Chiao-Lin, et al.
Publicado: (2019)

Sustained software development, not number of citations or journal choice, is indicative of accurate bioinformatic software
por: Gardner, Paul P., et al.
Publicado: (2022)

ISHAPE: new rapid and accurate software for haplotyping
por: Delaneau, Olivier, et al.
Publicado: (2007)

Software comparison for evaluating genomic copy number variation for Affymetrix 6.0 SNP array platform
por: Eckel-Passow, Jeanette E, et al.
Publicado: (2011)

SMRT Sequencing for Parallel Analysis of Multiple Targets and Accurate SNP Phasing
por: Guo, Xiaoge, et al.
Publicado: (2015)

Accurate prediction of quantitative traits with failed SNP calls in canola and maize
por: Weber, Sven E., et al.
Publicado: (2023)

SNP Cutter: a comprehensive tool for SNP PCR–RFLP assay design
por: Zhang, Ruifang, et al.
Publicado: (2005)

SNP-RFLPing 2: an updated and integrated PCR-RFLP tool for SNP genotyping
por: Chang, Hsueh-Wei, et al.
Publicado: (2010)

Software tools
por: Kernighan, Plauger, et al.
Publicado: (1976)

A parallel and sensitive software tool for methylation analysis on multicore platforms
por: Tárraga, Joaquín, et al.
Publicado: (2015)

Toward accurate high-throughput SNP genotyping in the presence of inherited copy number variation
por: MacConaill, Laura E, et al.
Publicado: (2007)

SNP-array based whole genome homozygosity mapping: A quick and powerful tool to achieve an accurate diagnosis in LGMD2 patients()
por: Papić, Lea, et al.
Publicado: (2011)

microbeSEG: A deep learning software tool with OMERO data management for efficient and accurate cell segmentation
por: Scherr, Tim, et al.
Publicado: (2022)

Alignment tools software tools
por: Borghi, S., et al.
Publicado: (2014)

Hybridization modeling of oligonucleotide SNP arrays for accurate DNA copy number estimation
por: Wan, Lin, et al.
Publicado: (2009)

PredictSNP: Robust and Accurate Consensus Classifier for Prediction of Disease-Related Mutations
por: Bendl, Jaroslav, et al.
Publicado: (2014)

Evaluation of Different SNP Analysis Software and Optimal Mining Process in Tree Species
por: Bu, Mengjia, et al.
Publicado: (2023)

QuantiSNP: an Objective Bayes Hidden-Markov Model to detect and accurately map copy number variation using SNP genotyping data
por: Colella, Stefano, et al.
Publicado: (2007)

SNP Data Quality Control in a National Beef and Dairy Cattle System and Highly Accurate SNP Based Parentage Verification and Identification
por: McClure, Matthew C., et al.
Publicado: (2018)

PredictSNP2: A Unified Platform for Accurately Evaluating SNP Effects by Exploiting the Different Characteristics of Variants in Distinct Genomic Regions
por: Bendl, Jaroslav, et al.
Publicado: (2016)

Development and comparison of RNA-sequencing pipelines for more accurate SNP identification: practical example of functional SNP detection associated with feed efficiency in Nellore beef cattle
por: Lam, S., et al.
Publicado: (2020)

SNPMap—An integrated visual SNP interpretation tool
por: Liu, Miaosen, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_fnld90ge9khhpdcu4rb4dnl3vq