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StellaBase: The Nematostella vectensis Genomics Database

StellaBase, the Nematostella vectensis Genomics Database, is a web-based resource that will facilitate desktop and bench-top studies of the starlet sea anemone. Nematostella is an emerging model organism that has already proven useful for addressing fundamental questions in developmental evolution a...

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Detalles Bibliográficos
Autores principales: Sullivan, James C., Ryan, Joseph F., Watson, James A., Webb, Jeramy, Mullikin, James C., Rokhsar, Daniel, Finnerty, John R.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2006
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347383/
https://www.ncbi.nlm.nih.gov/pubmed/16381919
http://dx.doi.org/10.1093/nar/gkj020
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author Sullivan, James C.
Ryan, Joseph F.
Watson, James A.
Webb, Jeramy
Mullikin, James C.
Rokhsar, Daniel
Finnerty, John R.
author_facet Sullivan, James C.
Ryan, Joseph F.
Watson, James A.
Webb, Jeramy
Mullikin, James C.
Rokhsar, Daniel
Finnerty, John R.
author_sort Sullivan, James C.
collection PubMed
description StellaBase, the Nematostella vectensis Genomics Database, is a web-based resource that will facilitate desktop and bench-top studies of the starlet sea anemone. Nematostella is an emerging model organism that has already proven useful for addressing fundamental questions in developmental evolution and evolutionary genomics. StellaBase allows users to query the assembled Nematostella genome, a confirmed gene library, and a predicted genome using both keyword and homology based search functions. Data provided by these searches will elucidate gene family evolution in early animals. Unique research tools, including a Nematostella genetic stock library, a primer library, a literature repository and a gene expression library will provide support to the burgeoning Nematostella research community. The development of StellaBase accompanies significant upgrades to CnidBase, the Cnidarian Evolutionary Genomics Database. With the completion of the first sequenced cnidarian genome, genome comparison tools have been added to CnidBase. In addition, StellaBase provides a framework for the integration of additional species-specific databases into CnidBase. StellaBase is available at .
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spelling pubmed-13473832006-01-25 StellaBase: The Nematostella vectensis Genomics Database Sullivan, James C. Ryan, Joseph F. Watson, James A. Webb, Jeramy Mullikin, James C. Rokhsar, Daniel Finnerty, John R. Nucleic Acids Res Article StellaBase, the Nematostella vectensis Genomics Database, is a web-based resource that will facilitate desktop and bench-top studies of the starlet sea anemone. Nematostella is an emerging model organism that has already proven useful for addressing fundamental questions in developmental evolution and evolutionary genomics. StellaBase allows users to query the assembled Nematostella genome, a confirmed gene library, and a predicted genome using both keyword and homology based search functions. Data provided by these searches will elucidate gene family evolution in early animals. Unique research tools, including a Nematostella genetic stock library, a primer library, a literature repository and a gene expression library will provide support to the burgeoning Nematostella research community. The development of StellaBase accompanies significant upgrades to CnidBase, the Cnidarian Evolutionary Genomics Database. With the completion of the first sequenced cnidarian genome, genome comparison tools have been added to CnidBase. In addition, StellaBase provides a framework for the integration of additional species-specific databases into CnidBase. StellaBase is available at . Oxford University Press 2006-01-01 2005-12-28 /pmc/articles/PMC1347383/ /pubmed/16381919 http://dx.doi.org/10.1093/nar/gkj020 Text en © The Author 2006. Published by Oxford University Press. All rights reserved
spellingShingle Article
Sullivan, James C.
Ryan, Joseph F.
Watson, James A.
Webb, Jeramy
Mullikin, James C.
Rokhsar, Daniel
Finnerty, John R.
StellaBase: The Nematostella vectensis Genomics Database
title StellaBase: The Nematostella vectensis Genomics Database
title_full StellaBase: The Nematostella vectensis Genomics Database
title_fullStr StellaBase: The Nematostella vectensis Genomics Database
title_full_unstemmed StellaBase: The Nematostella vectensis Genomics Database
title_short StellaBase: The Nematostella vectensis Genomics Database
title_sort stellabase: the nematostella vectensis genomics database
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347383/
https://www.ncbi.nlm.nih.gov/pubmed/16381919
http://dx.doi.org/10.1093/nar/gkj020
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