Cargando…

MODBASE: a database of annotated comparative protein structure models and associated resources

Mostrar otras versiones (3)

MODBASE () is a database of annotated comparative protein structure models for all available protein sequences that can be matched to at least one known protein structure. The models are calculated by MODPIPE, an automated modeling pipeline that relies on MODELLER for fold assignment, sequence–struc...

Descripción completa

Detalles Bibliográficos
Autores principales:	Pieper, Ursula, Eswar, Narayanan, Davis, Fred P., Braberg, Hannes, Madhusudhan, M. S., Rossi, Andrea, Marti-Renom, Marc, Karchin, Rachel, Webb, Ben M., Eramian, David, Shen, Min-Yi, Kelly, Libusha, Melo, Francisco, Sali, Andrej
Formato:	Texto
Lenguaje:	English
Publicado:	Oxford University Press 2006
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347422/ https://www.ncbi.nlm.nih.gov/pubmed/16381869 http://dx.doi.org/10.1093/nar/gkj059

Ejemplares similares

modbase, a database of annotated comparative protein structure models and associated resources
por: Pieper, Ursula, et al.
Publicado: (2009)

ModBase, a database of annotated comparative protein structure models, and associated resources
por: Pieper, Ursula, et al.
Publicado: (2011)

ModBase, a database of annotated comparative protein structure models and associated resources
por: Pieper, Ursula, et al.
Publicado: (2014)

DBAli tools: mining the protein structure space
por: Marti-Renom, Marc A., et al.
Publicado: (2007)

Protein complex compositions predicted by structural similarity
por: Davis, Fred P., et al.
Publicado: (2006)

The AnnoLite and AnnoLyze programs for comparative annotation of protein structures
por: Marti-Renom, Marc A, et al.
Publicado: (2007)

A survey of integral α-helical membrane proteins
por: Kelly, Libusha, et al.
Publicado: (2009)

Prediction of enzyme function by combining sequence similarity and protein interactions
por: Espadaler, Jordi, et al.
Publicado: (2008)

A Kernel for Open Source Drug Discovery in Tropical Diseases
por: Ortí, Leticia, et al.
Publicado: (2009)

Target selection and annotation for the structural genomics of the amidohydrolase and enolase superfamilies
por: Pieper, Ursula, et al.
Publicado: (2009)

From systems to structure — using genetic data to model protein structures
por: Braberg, Hannes, et al.
Publicado: (2022)

Target Prediction for an Open Access Set of Compounds Active against Mycobacterium tuberculosis
por: Martínez-Jiménez, Francisco, et al.
Publicado: (2013)

SARA: a server for function annotation of RNA structures
por: Capriotti, Emidio, et al.
Publicado: (2009)

Characterization of Protein Hubs by Inferring Interacting Motifs from Protein Interactions
por: Aragues, Ramon, et al.
Publicado: (2007)

Comparative Modeling of Drug Target Proteins
por: Webb, B., et al.
Publicado: (2014)

Large language models improve annotation of viral proteins
por: Flamholz, Zachary N., et al.
Publicado: (2023)

Evolutionarily Conserved Substrate Substructures for Automated Annotation of Enzyme Superfamilies
por: Chiang, Ranyee A., et al.
Publicado: (2008)

DICOM re‐encoding of volumetrically annotated Lung Imaging Database Consortium (LIDC) nodules
por: Fedorov, Andrey, et al.
Publicado: (2020)

PCAS – a precomputed proteome annotation database resource
por: Zhang, Yong, et al.
Publicado: (2003)

Comparative Modeling of Drug Target Proteins
por: Eswar, N., et al.
Publicado: (2007)

The GOA database in 2009—an integrated Gene Ontology Annotation resource
por: Barrell, Daniel, et al.
Publicado: (2009)

Maize microarray annotation database
por: Coetzer, Nanette, et al.
Publicado: (2011)

The Overlap of Small Molecule and Protein Binding Sites within Families of Protein Structures
por: Davis, Fred P., et al.
Publicado: (2010)

Evolutionary potentials: structure specific knowledge-based potentials exploiting the evolutionary record of sequence homologs
por: Panjkovich, Alejandro, et al.
Publicado: (2008)

The UniProt-GO Annotation database in 2011
por: Dimmer, Emily C., et al.
Publicado: (2012)

RESOURCERER: a database for annotating and linking microarray resources within and across species
por: Tsai, Jennifer, et al.
Publicado: (2001)

Estimating the annotation error rate of curated GO database sequence annotations
por: Jones, Craig E, et al.
Publicado: (2007)

HotSpotAnnotations—a database for hotspot mutations and annotations in cancer
por: Trevino, Victor
Publicado: (2020)

The vertebrate genome annotation (Vega) database
por: Wilming, L. G., et al.
Publicado: (2008)

The Vertebrate Genome Annotation (Vega) database
por: Ashurst, J. L., et al.
Publicado: (2005)

GeneDB—an annotation database for pathogens
por: Logan-Klumpler, Flora J., et al.
Publicado: (2012)

Classifying Variants of Undetermined Significance in BRCA2 with Protein Likelihood Ratios
por: Karchin, Rachel, et al.
Publicado: (2008)

Adventures in time and space: Splicing efficiency and RNA polymerase II elongation rate
por: Moehle, Erica A, et al.
Publicado: (2014)

Stereochemical Criteria for Prediction of the Effects of Proline Mutations on Protein Stability
por: Bajaj, Kanika, et al.
Publicado: (2007)

Prediction of Functionally Important Phospho-Regulatory Events in Xenopus laevis Oocytes
por: Johnson, Jeffrey R., et al.
Publicado: (2015)

BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models
por: Li, Chen, et al.
Publicado: (2010)

Mammalian Annotation Database for improved annotation and functional classification of Omics datasets from less well-annotated organisms
por: Bick, Jochen T, et al.
Publicado: (2019)

BAR-PLUS: the Bologna Annotation Resource Plus for functional and structural annotation of protein sequences
por: Piovesan, Damiano, et al.
Publicado: (2011)

Discovering gene annotations in biomedical text databases
por: Cakmak, Ali, et al.
Publicado: (2008)

Columba: an integrated database of proteins, structures, and annotations
por: Trißl, Silke, et al.
Publicado: (2005)

Cannot write session to /tmp/vufind_sessions/sess_ph0rrh42sf1e50okv29iubdivk