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CryptoDB: a Cryptosporidium bioinformatics resource update

The database, CryptoDB (), is a community bioinformatics resource for the AIDS-related apicomplexan-parasite, Cryptosporidium. CryptoDB integrates whole genome sequence and annotation with expressed sequence tag and genome survey sequence data and provides supplemental bioinformatics analyses and da...

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Detalles Bibliográficos
Autores principales: Heiges, Mark, Wang, Haiming, Robinson, Edward, Aurrecoechea, Cristina, Gao, Xin, Kaluskar, Nivedita, Rhodes, Philippa, Wang, Sammy, He, Cong-Zhou, Su, Yanqi, Miller, John, Kraemer, Eileen, Kissinger, Jessica C.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2006
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347441/
https://www.ncbi.nlm.nih.gov/pubmed/16381902
http://dx.doi.org/10.1093/nar/gkj078
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author Heiges, Mark
Wang, Haiming
Robinson, Edward
Aurrecoechea, Cristina
Gao, Xin
Kaluskar, Nivedita
Rhodes, Philippa
Wang, Sammy
He, Cong-Zhou
Su, Yanqi
Miller, John
Kraemer, Eileen
Kissinger, Jessica C.
author_facet Heiges, Mark
Wang, Haiming
Robinson, Edward
Aurrecoechea, Cristina
Gao, Xin
Kaluskar, Nivedita
Rhodes, Philippa
Wang, Sammy
He, Cong-Zhou
Su, Yanqi
Miller, John
Kraemer, Eileen
Kissinger, Jessica C.
author_sort Heiges, Mark
collection PubMed
description The database, CryptoDB (), is a community bioinformatics resource for the AIDS-related apicomplexan-parasite, Cryptosporidium. CryptoDB integrates whole genome sequence and annotation with expressed sequence tag and genome survey sequence data and provides supplemental bioinformatics analyses and data-mining tools. A simple, yet comprehensive web interface is available for mining and visualizing the data. CryptoDB is allied with the databases PlasmoDB and ToxoDB via ApiDB, an NIH/NIAID-fundedBioinformatics Resource Center. Recent updates to CryptoDB include the deposition of annotated genome sequences for Cryptosporidium parvum and Cryptosporidium hominis, migration to a relational database (GUS), a new query and visualization interface and the introduction of Web services.
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spelling pubmed-13474412006-01-25 CryptoDB: a Cryptosporidium bioinformatics resource update Heiges, Mark Wang, Haiming Robinson, Edward Aurrecoechea, Cristina Gao, Xin Kaluskar, Nivedita Rhodes, Philippa Wang, Sammy He, Cong-Zhou Su, Yanqi Miller, John Kraemer, Eileen Kissinger, Jessica C. Nucleic Acids Res Article The database, CryptoDB (), is a community bioinformatics resource for the AIDS-related apicomplexan-parasite, Cryptosporidium. CryptoDB integrates whole genome sequence and annotation with expressed sequence tag and genome survey sequence data and provides supplemental bioinformatics analyses and data-mining tools. A simple, yet comprehensive web interface is available for mining and visualizing the data. CryptoDB is allied with the databases PlasmoDB and ToxoDB via ApiDB, an NIH/NIAID-fundedBioinformatics Resource Center. Recent updates to CryptoDB include the deposition of annotated genome sequences for Cryptosporidium parvum and Cryptosporidium hominis, migration to a relational database (GUS), a new query and visualization interface and the introduction of Web services. Oxford University Press 2006-01-01 2005-12-28 /pmc/articles/PMC1347441/ /pubmed/16381902 http://dx.doi.org/10.1093/nar/gkj078 Text en © The Author 2006. Published by Oxford University Press. All rights reserved
spellingShingle Article
Heiges, Mark
Wang, Haiming
Robinson, Edward
Aurrecoechea, Cristina
Gao, Xin
Kaluskar, Nivedita
Rhodes, Philippa
Wang, Sammy
He, Cong-Zhou
Su, Yanqi
Miller, John
Kraemer, Eileen
Kissinger, Jessica C.
CryptoDB: a Cryptosporidium bioinformatics resource update
title CryptoDB: a Cryptosporidium bioinformatics resource update
title_full CryptoDB: a Cryptosporidium bioinformatics resource update
title_fullStr CryptoDB: a Cryptosporidium bioinformatics resource update
title_full_unstemmed CryptoDB: a Cryptosporidium bioinformatics resource update
title_short CryptoDB: a Cryptosporidium bioinformatics resource update
title_sort cryptodb: a cryptosporidium bioinformatics resource update
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347441/
https://www.ncbi.nlm.nih.gov/pubmed/16381902
http://dx.doi.org/10.1093/nar/gkj078
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