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dictyBase, the model organism database for Dictyostelium discoideum
dictyBase () is the model organism database (MOD) for the social amoeba Dictyostelium discoideum. The unique biology and phylogenetic position of Dictyostelium offer a great opportunity to gain knowledge of processes not characterized in other organisms. The recent completion of the 34 MB genome seq...
Autores principales: | , , , , , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2006
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347453/ https://www.ncbi.nlm.nih.gov/pubmed/16381903 http://dx.doi.org/10.1093/nar/gkj090 |
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author | Chisholm, Rex L. Gaudet, Pascale Just, Eric M. Pilcher, Karen E. Fey, Petra Merchant, Sohel N. Kibbe, Warren A. |
author_facet | Chisholm, Rex L. Gaudet, Pascale Just, Eric M. Pilcher, Karen E. Fey, Petra Merchant, Sohel N. Kibbe, Warren A. |
author_sort | Chisholm, Rex L. |
collection | PubMed |
description | dictyBase () is the model organism database (MOD) for the social amoeba Dictyostelium discoideum. The unique biology and phylogenetic position of Dictyostelium offer a great opportunity to gain knowledge of processes not characterized in other organisms. The recent completion of the 34 MB genome sequence, together with the sizable scientific literature using Dictyostelium as a research organism, provided the necessary tools to create a well-annotated genome. dictyBase has leveraged software developed by the Saccharomyces Genome Database and the Generic Model Organism Database project. This has reduced the time required to develop a full-featured MOD and greatly facilitated our ability to focus on annotation and providing new functionality. We hope that manual curation of the Dictyostelium genome will facilitate the annotation of other genomes. |
format | Text |
id | pubmed-1347453 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2006 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-13474532006-01-25 dictyBase, the model organism database for Dictyostelium discoideum Chisholm, Rex L. Gaudet, Pascale Just, Eric M. Pilcher, Karen E. Fey, Petra Merchant, Sohel N. Kibbe, Warren A. Nucleic Acids Res Article dictyBase () is the model organism database (MOD) for the social amoeba Dictyostelium discoideum. The unique biology and phylogenetic position of Dictyostelium offer a great opportunity to gain knowledge of processes not characterized in other organisms. The recent completion of the 34 MB genome sequence, together with the sizable scientific literature using Dictyostelium as a research organism, provided the necessary tools to create a well-annotated genome. dictyBase has leveraged software developed by the Saccharomyces Genome Database and the Generic Model Organism Database project. This has reduced the time required to develop a full-featured MOD and greatly facilitated our ability to focus on annotation and providing new functionality. We hope that manual curation of the Dictyostelium genome will facilitate the annotation of other genomes. Oxford University Press 2006-01-01 2005-12-28 /pmc/articles/PMC1347453/ /pubmed/16381903 http://dx.doi.org/10.1093/nar/gkj090 Text en © The Author 2006. Published by Oxford University Press. All rights reserved |
spellingShingle | Article Chisholm, Rex L. Gaudet, Pascale Just, Eric M. Pilcher, Karen E. Fey, Petra Merchant, Sohel N. Kibbe, Warren A. dictyBase, the model organism database for Dictyostelium discoideum |
title | dictyBase, the model organism database for Dictyostelium discoideum |
title_full | dictyBase, the model organism database for Dictyostelium discoideum |
title_fullStr | dictyBase, the model organism database for Dictyostelium discoideum |
title_full_unstemmed | dictyBase, the model organism database for Dictyostelium discoideum |
title_short | dictyBase, the model organism database for Dictyostelium discoideum |
title_sort | dictybase, the model organism database for dictyostelium discoideum |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347453/ https://www.ncbi.nlm.nih.gov/pubmed/16381903 http://dx.doi.org/10.1093/nar/gkj090 |
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