Cargando…
TcruziDB: an integrated, post-genomics community resource for Trypanosoma cruzi
TcruziDB () is an integrated post-genomics database for the parasitic organism, Trypanosoma cruzi, the causative agent of Chagas' disease. TcruziDB was established in 2003 as a flat-file database with tools for mining the unannotated sequence reads and preliminary contig assemblies emerging fro...
Autores principales: | , , , , |
---|---|
Formato: | Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2006
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347470/ https://www.ncbi.nlm.nih.gov/pubmed/16381904 http://dx.doi.org/10.1093/nar/gkj108 |
_version_ | 1782126626320941056 |
---|---|
author | Agüero, Fernán Zheng, Wenlong Weatherly, D. Brent Mendes, Pablo Kissinger, Jessica C. |
author_facet | Agüero, Fernán Zheng, Wenlong Weatherly, D. Brent Mendes, Pablo Kissinger, Jessica C. |
author_sort | Agüero, Fernán |
collection | PubMed |
description | TcruziDB () is an integrated post-genomics database for the parasitic organism, Trypanosoma cruzi, the causative agent of Chagas' disease. TcruziDB was established in 2003 as a flat-file database with tools for mining the unannotated sequence reads and preliminary contig assemblies emerging from the Tri-Tryp genome consortium (TIGR/SBRI/Karolinska). Today, TcruziDB houses the recently published assembled genomic contigs and annotation provided by the genome consortium in a relational database supported by the Genomics Unified Schema (GUS) architecture. The combination of an annotated genome and a relational architecture has facilitated the integration of genomic data with expression data (proteomic and EST) and permitted the construction of automated analysis pipelines. TcruziDB has accepted, and will continue to accept the deposition of genomic and functional genomic datasets contributed by the research community. |
format | Text |
id | pubmed-1347470 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2006 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-13474702006-01-25 TcruziDB: an integrated, post-genomics community resource for Trypanosoma cruzi Agüero, Fernán Zheng, Wenlong Weatherly, D. Brent Mendes, Pablo Kissinger, Jessica C. Nucleic Acids Res Article TcruziDB () is an integrated post-genomics database for the parasitic organism, Trypanosoma cruzi, the causative agent of Chagas' disease. TcruziDB was established in 2003 as a flat-file database with tools for mining the unannotated sequence reads and preliminary contig assemblies emerging from the Tri-Tryp genome consortium (TIGR/SBRI/Karolinska). Today, TcruziDB houses the recently published assembled genomic contigs and annotation provided by the genome consortium in a relational database supported by the Genomics Unified Schema (GUS) architecture. The combination of an annotated genome and a relational architecture has facilitated the integration of genomic data with expression data (proteomic and EST) and permitted the construction of automated analysis pipelines. TcruziDB has accepted, and will continue to accept the deposition of genomic and functional genomic datasets contributed by the research community. Oxford University Press 2006-01-01 2005-12-28 /pmc/articles/PMC1347470/ /pubmed/16381904 http://dx.doi.org/10.1093/nar/gkj108 Text en © The Author 2006. Published by Oxford University Press. All rights reserved |
spellingShingle | Article Agüero, Fernán Zheng, Wenlong Weatherly, D. Brent Mendes, Pablo Kissinger, Jessica C. TcruziDB: an integrated, post-genomics community resource for Trypanosoma cruzi |
title | TcruziDB: an integrated, post-genomics community resource for Trypanosoma cruzi |
title_full | TcruziDB: an integrated, post-genomics community resource for Trypanosoma cruzi |
title_fullStr | TcruziDB: an integrated, post-genomics community resource for Trypanosoma cruzi |
title_full_unstemmed | TcruziDB: an integrated, post-genomics community resource for Trypanosoma cruzi |
title_short | TcruziDB: an integrated, post-genomics community resource for Trypanosoma cruzi |
title_sort | tcruzidb: an integrated, post-genomics community resource for trypanosoma cruzi |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347470/ https://www.ncbi.nlm.nih.gov/pubmed/16381904 http://dx.doi.org/10.1093/nar/gkj108 |
work_keys_str_mv | AT aguerofernan tcruzidbanintegratedpostgenomicscommunityresourcefortrypanosomacruzi AT zhengwenlong tcruzidbanintegratedpostgenomicscommunityresourcefortrypanosomacruzi AT weatherlydbrent tcruzidbanintegratedpostgenomicscommunityresourcefortrypanosomacruzi AT mendespablo tcruzidbanintegratedpostgenomicscommunityresourcefortrypanosomacruzi AT kissingerjessicac tcruzidbanintegratedpostgenomicscommunityresourcefortrypanosomacruzi |