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TcruziDB: an integrated, post-genomics community resource for Trypanosoma cruzi

TcruziDB () is an integrated post-genomics database for the parasitic organism, Trypanosoma cruzi, the causative agent of Chagas' disease. TcruziDB was established in 2003 as a flat-file database with tools for mining the unannotated sequence reads and preliminary contig assemblies emerging fro...

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Detalles Bibliográficos
Autores principales: Agüero, Fernán, Zheng, Wenlong, Weatherly, D. Brent, Mendes, Pablo, Kissinger, Jessica C.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2006
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347470/
https://www.ncbi.nlm.nih.gov/pubmed/16381904
http://dx.doi.org/10.1093/nar/gkj108
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author Agüero, Fernán
Zheng, Wenlong
Weatherly, D. Brent
Mendes, Pablo
Kissinger, Jessica C.
author_facet Agüero, Fernán
Zheng, Wenlong
Weatherly, D. Brent
Mendes, Pablo
Kissinger, Jessica C.
author_sort Agüero, Fernán
collection PubMed
description TcruziDB () is an integrated post-genomics database for the parasitic organism, Trypanosoma cruzi, the causative agent of Chagas' disease. TcruziDB was established in 2003 as a flat-file database with tools for mining the unannotated sequence reads and preliminary contig assemblies emerging from the Tri-Tryp genome consortium (TIGR/SBRI/Karolinska). Today, TcruziDB houses the recently published assembled genomic contigs and annotation provided by the genome consortium in a relational database supported by the Genomics Unified Schema (GUS) architecture. The combination of an annotated genome and a relational architecture has facilitated the integration of genomic data with expression data (proteomic and EST) and permitted the construction of automated analysis pipelines. TcruziDB has accepted, and will continue to accept the deposition of genomic and functional genomic datasets contributed by the research community.
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spelling pubmed-13474702006-01-25 TcruziDB: an integrated, post-genomics community resource for Trypanosoma cruzi Agüero, Fernán Zheng, Wenlong Weatherly, D. Brent Mendes, Pablo Kissinger, Jessica C. Nucleic Acids Res Article TcruziDB () is an integrated post-genomics database for the parasitic organism, Trypanosoma cruzi, the causative agent of Chagas' disease. TcruziDB was established in 2003 as a flat-file database with tools for mining the unannotated sequence reads and preliminary contig assemblies emerging from the Tri-Tryp genome consortium (TIGR/SBRI/Karolinska). Today, TcruziDB houses the recently published assembled genomic contigs and annotation provided by the genome consortium in a relational database supported by the Genomics Unified Schema (GUS) architecture. The combination of an annotated genome and a relational architecture has facilitated the integration of genomic data with expression data (proteomic and EST) and permitted the construction of automated analysis pipelines. TcruziDB has accepted, and will continue to accept the deposition of genomic and functional genomic datasets contributed by the research community. Oxford University Press 2006-01-01 2005-12-28 /pmc/articles/PMC1347470/ /pubmed/16381904 http://dx.doi.org/10.1093/nar/gkj108 Text en © The Author 2006. Published by Oxford University Press. All rights reserved
spellingShingle Article
Agüero, Fernán
Zheng, Wenlong
Weatherly, D. Brent
Mendes, Pablo
Kissinger, Jessica C.
TcruziDB: an integrated, post-genomics community resource for Trypanosoma cruzi
title TcruziDB: an integrated, post-genomics community resource for Trypanosoma cruzi
title_full TcruziDB: an integrated, post-genomics community resource for Trypanosoma cruzi
title_fullStr TcruziDB: an integrated, post-genomics community resource for Trypanosoma cruzi
title_full_unstemmed TcruziDB: an integrated, post-genomics community resource for Trypanosoma cruzi
title_short TcruziDB: an integrated, post-genomics community resource for Trypanosoma cruzi
title_sort tcruzidb: an integrated, post-genomics community resource for trypanosoma cruzi
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347470/
https://www.ncbi.nlm.nih.gov/pubmed/16381904
http://dx.doi.org/10.1093/nar/gkj108
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