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The UCSC Archaeal Genome Browser

As more archaeal genomes are sequenced, effective research and analysis tools are needed to integrate the diverse information available for any given locus. The feature-rich UCSC Genome Browser, created originally to annotate the human genome, can be applied to any sequenced organism. We have create...

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Detalles Bibliográficos
Autores principales: Schneider, Kevin L., Pollard, Katherine S., Baertsch, Robert, Pohl, Andy, Lowe, Todd M.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2006
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347496/
https://www.ncbi.nlm.nih.gov/pubmed/16381898
http://dx.doi.org/10.1093/nar/gkj134
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author Schneider, Kevin L.
Pollard, Katherine S.
Baertsch, Robert
Pohl, Andy
Lowe, Todd M.
author_facet Schneider, Kevin L.
Pollard, Katherine S.
Baertsch, Robert
Pohl, Andy
Lowe, Todd M.
author_sort Schneider, Kevin L.
collection PubMed
description As more archaeal genomes are sequenced, effective research and analysis tools are needed to integrate the diverse information available for any given locus. The feature-rich UCSC Genome Browser, created originally to annotate the human genome, can be applied to any sequenced organism. We have created a UCSC Archaeal Genome Browser, available at , currently with 26 archaeal genomes. It displays G/C content, gene and operon annotation from multiple sources, sequence motifs (promoters and Shine-Dalgarno), microarray data, multi-genome alignments and protein conservation across phylogenetic and habitat categories. We encourage submission of new experimental and bioinformatic analysis from contributors. The purpose of this tool is to aid biological discovery and facilitate greater collaboration within the archaeal research community.
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spelling pubmed-13474962006-01-25 The UCSC Archaeal Genome Browser Schneider, Kevin L. Pollard, Katherine S. Baertsch, Robert Pohl, Andy Lowe, Todd M. Nucleic Acids Res Article As more archaeal genomes are sequenced, effective research and analysis tools are needed to integrate the diverse information available for any given locus. The feature-rich UCSC Genome Browser, created originally to annotate the human genome, can be applied to any sequenced organism. We have created a UCSC Archaeal Genome Browser, available at , currently with 26 archaeal genomes. It displays G/C content, gene and operon annotation from multiple sources, sequence motifs (promoters and Shine-Dalgarno), microarray data, multi-genome alignments and protein conservation across phylogenetic and habitat categories. We encourage submission of new experimental and bioinformatic analysis from contributors. The purpose of this tool is to aid biological discovery and facilitate greater collaboration within the archaeal research community. Oxford University Press 2006-01-01 2005-12-28 /pmc/articles/PMC1347496/ /pubmed/16381898 http://dx.doi.org/10.1093/nar/gkj134 Text en © The Author 2006. Published by Oxford University Press. All rights reserved
spellingShingle Article
Schneider, Kevin L.
Pollard, Katherine S.
Baertsch, Robert
Pohl, Andy
Lowe, Todd M.
The UCSC Archaeal Genome Browser
title The UCSC Archaeal Genome Browser
title_full The UCSC Archaeal Genome Browser
title_fullStr The UCSC Archaeal Genome Browser
title_full_unstemmed The UCSC Archaeal Genome Browser
title_short The UCSC Archaeal Genome Browser
title_sort ucsc archaeal genome browser
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347496/
https://www.ncbi.nlm.nih.gov/pubmed/16381898
http://dx.doi.org/10.1093/nar/gkj134
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