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BodyMap-Xs: anatomical breakdown of 17 million animal ESTs for cross-species comparison of gene expression
BodyMap-Xs () is a database for cross-species gene expression comparison. It was created by the anatomical breakdown of 17 million animal expressed sequence tag (EST) records in DDBJ using a sorting program tailored for this purpose. In BodyMap-Xs, users are allowed to compare the expression pattern...
Autores principales: | , , , , , , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2006
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347499/ https://www.ncbi.nlm.nih.gov/pubmed/16381946 http://dx.doi.org/10.1093/nar/gkj137 |
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author | Ogasawara, Osamu Otsuji, Makiko Watanabe, Kouji Iizuka, Takayasu Tamura, Takuro Hishiki, Teruyoshi Kawamoto, Shoko Okubo, Kousaku |
author_facet | Ogasawara, Osamu Otsuji, Makiko Watanabe, Kouji Iizuka, Takayasu Tamura, Takuro Hishiki, Teruyoshi Kawamoto, Shoko Okubo, Kousaku |
author_sort | Ogasawara, Osamu |
collection | PubMed |
description | BodyMap-Xs () is a database for cross-species gene expression comparison. It was created by the anatomical breakdown of 17 million animal expressed sequence tag (EST) records in DDBJ using a sorting program tailored for this purpose. In BodyMap-Xs, users are allowed to compare the expression patterns of orthologous and paralogous genes in a coherent manner. This will provide valuable insights for the evolutionary study of gene expression and identification of a responsive motif for a particular expression pattern. In addition, starting from a concise overview of the taxonomical and anatomical breakdown of all animal ESTs, users can navigate to obtain gene expression ranking of a particular tissue in a particular animal. This method may lead to the understanding of the similarities and differences between the homologous tissues across animal species. BodyMap-Xs will be automatically updated in synchronization with the major update in DDBJ, which occurs periodically. |
format | Text |
id | pubmed-1347499 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2006 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-13474992006-01-25 BodyMap-Xs: anatomical breakdown of 17 million animal ESTs for cross-species comparison of gene expression Ogasawara, Osamu Otsuji, Makiko Watanabe, Kouji Iizuka, Takayasu Tamura, Takuro Hishiki, Teruyoshi Kawamoto, Shoko Okubo, Kousaku Nucleic Acids Res Article BodyMap-Xs () is a database for cross-species gene expression comparison. It was created by the anatomical breakdown of 17 million animal expressed sequence tag (EST) records in DDBJ using a sorting program tailored for this purpose. In BodyMap-Xs, users are allowed to compare the expression patterns of orthologous and paralogous genes in a coherent manner. This will provide valuable insights for the evolutionary study of gene expression and identification of a responsive motif for a particular expression pattern. In addition, starting from a concise overview of the taxonomical and anatomical breakdown of all animal ESTs, users can navigate to obtain gene expression ranking of a particular tissue in a particular animal. This method may lead to the understanding of the similarities and differences between the homologous tissues across animal species. BodyMap-Xs will be automatically updated in synchronization with the major update in DDBJ, which occurs periodically. Oxford University Press 2006-01-01 2005-12-28 /pmc/articles/PMC1347499/ /pubmed/16381946 http://dx.doi.org/10.1093/nar/gkj137 Text en © The Author 2006. Published by Oxford University Press. All rights reserved |
spellingShingle | Article Ogasawara, Osamu Otsuji, Makiko Watanabe, Kouji Iizuka, Takayasu Tamura, Takuro Hishiki, Teruyoshi Kawamoto, Shoko Okubo, Kousaku BodyMap-Xs: anatomical breakdown of 17 million animal ESTs for cross-species comparison of gene expression |
title | BodyMap-Xs: anatomical breakdown of 17 million animal ESTs for cross-species comparison of gene expression |
title_full | BodyMap-Xs: anatomical breakdown of 17 million animal ESTs for cross-species comparison of gene expression |
title_fullStr | BodyMap-Xs: anatomical breakdown of 17 million animal ESTs for cross-species comparison of gene expression |
title_full_unstemmed | BodyMap-Xs: anatomical breakdown of 17 million animal ESTs for cross-species comparison of gene expression |
title_short | BodyMap-Xs: anatomical breakdown of 17 million animal ESTs for cross-species comparison of gene expression |
title_sort | bodymap-xs: anatomical breakdown of 17 million animal ests for cross-species comparison of gene expression |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347499/ https://www.ncbi.nlm.nih.gov/pubmed/16381946 http://dx.doi.org/10.1093/nar/gkj137 |
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