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BodyMap-Xs: anatomical breakdown of 17 million animal ESTs for cross-species comparison of gene expression

BodyMap-Xs () is a database for cross-species gene expression comparison. It was created by the anatomical breakdown of 17 million animal expressed sequence tag (EST) records in DDBJ using a sorting program tailored for this purpose. In BodyMap-Xs, users are allowed to compare the expression pattern...

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Autores principales: Ogasawara, Osamu, Otsuji, Makiko, Watanabe, Kouji, Iizuka, Takayasu, Tamura, Takuro, Hishiki, Teruyoshi, Kawamoto, Shoko, Okubo, Kousaku
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2006
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347499/
https://www.ncbi.nlm.nih.gov/pubmed/16381946
http://dx.doi.org/10.1093/nar/gkj137
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author Ogasawara, Osamu
Otsuji, Makiko
Watanabe, Kouji
Iizuka, Takayasu
Tamura, Takuro
Hishiki, Teruyoshi
Kawamoto, Shoko
Okubo, Kousaku
author_facet Ogasawara, Osamu
Otsuji, Makiko
Watanabe, Kouji
Iizuka, Takayasu
Tamura, Takuro
Hishiki, Teruyoshi
Kawamoto, Shoko
Okubo, Kousaku
author_sort Ogasawara, Osamu
collection PubMed
description BodyMap-Xs () is a database for cross-species gene expression comparison. It was created by the anatomical breakdown of 17 million animal expressed sequence tag (EST) records in DDBJ using a sorting program tailored for this purpose. In BodyMap-Xs, users are allowed to compare the expression patterns of orthologous and paralogous genes in a coherent manner. This will provide valuable insights for the evolutionary study of gene expression and identification of a responsive motif for a particular expression pattern. In addition, starting from a concise overview of the taxonomical and anatomical breakdown of all animal ESTs, users can navigate to obtain gene expression ranking of a particular tissue in a particular animal. This method may lead to the understanding of the similarities and differences between the homologous tissues across animal species. BodyMap-Xs will be automatically updated in synchronization with the major update in DDBJ, which occurs periodically.
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spelling pubmed-13474992006-01-25 BodyMap-Xs: anatomical breakdown of 17 million animal ESTs for cross-species comparison of gene expression Ogasawara, Osamu Otsuji, Makiko Watanabe, Kouji Iizuka, Takayasu Tamura, Takuro Hishiki, Teruyoshi Kawamoto, Shoko Okubo, Kousaku Nucleic Acids Res Article BodyMap-Xs () is a database for cross-species gene expression comparison. It was created by the anatomical breakdown of 17 million animal expressed sequence tag (EST) records in DDBJ using a sorting program tailored for this purpose. In BodyMap-Xs, users are allowed to compare the expression patterns of orthologous and paralogous genes in a coherent manner. This will provide valuable insights for the evolutionary study of gene expression and identification of a responsive motif for a particular expression pattern. In addition, starting from a concise overview of the taxonomical and anatomical breakdown of all animal ESTs, users can navigate to obtain gene expression ranking of a particular tissue in a particular animal. This method may lead to the understanding of the similarities and differences between the homologous tissues across animal species. BodyMap-Xs will be automatically updated in synchronization with the major update in DDBJ, which occurs periodically. Oxford University Press 2006-01-01 2005-12-28 /pmc/articles/PMC1347499/ /pubmed/16381946 http://dx.doi.org/10.1093/nar/gkj137 Text en © The Author 2006. Published by Oxford University Press. All rights reserved
spellingShingle Article
Ogasawara, Osamu
Otsuji, Makiko
Watanabe, Kouji
Iizuka, Takayasu
Tamura, Takuro
Hishiki, Teruyoshi
Kawamoto, Shoko
Okubo, Kousaku
BodyMap-Xs: anatomical breakdown of 17 million animal ESTs for cross-species comparison of gene expression
title BodyMap-Xs: anatomical breakdown of 17 million animal ESTs for cross-species comparison of gene expression
title_full BodyMap-Xs: anatomical breakdown of 17 million animal ESTs for cross-species comparison of gene expression
title_fullStr BodyMap-Xs: anatomical breakdown of 17 million animal ESTs for cross-species comparison of gene expression
title_full_unstemmed BodyMap-Xs: anatomical breakdown of 17 million animal ESTs for cross-species comparison of gene expression
title_short BodyMap-Xs: anatomical breakdown of 17 million animal ESTs for cross-species comparison of gene expression
title_sort bodymap-xs: anatomical breakdown of 17 million animal ests for cross-species comparison of gene expression
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347499/
https://www.ncbi.nlm.nih.gov/pubmed/16381946
http://dx.doi.org/10.1093/nar/gkj137
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