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Génolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeasts

The Génolevures online database () provides tools and data relative to 4 complete and 10 partial genome sequences determined and manually annotated by the Génolevures Consortium, to facilitate comparative genomic studies of hemiascomycetous yeasts. With their relatively small and compact genomes, ye...

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Detalles Bibliográficos
Autores principales: Sherman, David, Durrens, Pascal, Iragne, Florian, Beyne, Emmanuelle, Nikolski, Macha, Souciet, Jean-Luc
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2006
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347522/
https://www.ncbi.nlm.nih.gov/pubmed/16381905
http://dx.doi.org/10.1093/nar/gkj160
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author Sherman, David
Durrens, Pascal
Iragne, Florian
Beyne, Emmanuelle
Nikolski, Macha
Souciet, Jean-Luc
author_facet Sherman, David
Durrens, Pascal
Iragne, Florian
Beyne, Emmanuelle
Nikolski, Macha
Souciet, Jean-Luc
author_sort Sherman, David
collection PubMed
description The Génolevures online database () provides tools and data relative to 4 complete and 10 partial genome sequences determined and manually annotated by the Génolevures Consortium, to facilitate comparative genomic studies of hemiascomycetous yeasts. With their relatively small and compact genomes, yeasts offer a unique opportunity for exploring eukaryotic genome evolution. The new version of the Génolevures database provides truly complete (subtelomere to subtelomere) chromosome sequences, 25 000 protein-coding and tRNA genes, and in silico analyses for each gene element. A new feature of the database is a novel collection of conserved multi-species protein families and their mapping to metabolic pathways, coupled with an advanced search feature. Data are presented with a focus on relations between genes and genomes: conservation of genes and gene families, speciation, chromosomal reorganization and synteny. The Génolevures site includes an area for specific studies by members of its international community.
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spelling pubmed-13475222006-01-25 Génolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeasts Sherman, David Durrens, Pascal Iragne, Florian Beyne, Emmanuelle Nikolski, Macha Souciet, Jean-Luc Nucleic Acids Res Article The Génolevures online database () provides tools and data relative to 4 complete and 10 partial genome sequences determined and manually annotated by the Génolevures Consortium, to facilitate comparative genomic studies of hemiascomycetous yeasts. With their relatively small and compact genomes, yeasts offer a unique opportunity for exploring eukaryotic genome evolution. The new version of the Génolevures database provides truly complete (subtelomere to subtelomere) chromosome sequences, 25 000 protein-coding and tRNA genes, and in silico analyses for each gene element. A new feature of the database is a novel collection of conserved multi-species protein families and their mapping to metabolic pathways, coupled with an advanced search feature. Data are presented with a focus on relations between genes and genomes: conservation of genes and gene families, speciation, chromosomal reorganization and synteny. The Génolevures site includes an area for specific studies by members of its international community. Oxford University Press 2006-01-01 2005-12-28 /pmc/articles/PMC1347522/ /pubmed/16381905 http://dx.doi.org/10.1093/nar/gkj160 Text en © The Author 2006. Published by Oxford University Press. All rights reserved
spellingShingle Article
Sherman, David
Durrens, Pascal
Iragne, Florian
Beyne, Emmanuelle
Nikolski, Macha
Souciet, Jean-Luc
Génolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeasts
title Génolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeasts
title_full Génolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeasts
title_fullStr Génolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeasts
title_full_unstemmed Génolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeasts
title_short Génolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeasts
title_sort génolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeasts
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347522/
https://www.ncbi.nlm.nih.gov/pubmed/16381905
http://dx.doi.org/10.1093/nar/gkj160
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