Cargando…
Génolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeasts
The Génolevures online database () provides tools and data relative to 4 complete and 10 partial genome sequences determined and manually annotated by the Génolevures Consortium, to facilitate comparative genomic studies of hemiascomycetous yeasts. With their relatively small and compact genomes, ye...
Autores principales: | , , , , , |
---|---|
Formato: | Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2006
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347522/ https://www.ncbi.nlm.nih.gov/pubmed/16381905 http://dx.doi.org/10.1093/nar/gkj160 |
_version_ | 1782126639952429056 |
---|---|
author | Sherman, David Durrens, Pascal Iragne, Florian Beyne, Emmanuelle Nikolski, Macha Souciet, Jean-Luc |
author_facet | Sherman, David Durrens, Pascal Iragne, Florian Beyne, Emmanuelle Nikolski, Macha Souciet, Jean-Luc |
author_sort | Sherman, David |
collection | PubMed |
description | The Génolevures online database () provides tools and data relative to 4 complete and 10 partial genome sequences determined and manually annotated by the Génolevures Consortium, to facilitate comparative genomic studies of hemiascomycetous yeasts. With their relatively small and compact genomes, yeasts offer a unique opportunity for exploring eukaryotic genome evolution. The new version of the Génolevures database provides truly complete (subtelomere to subtelomere) chromosome sequences, 25 000 protein-coding and tRNA genes, and in silico analyses for each gene element. A new feature of the database is a novel collection of conserved multi-species protein families and their mapping to metabolic pathways, coupled with an advanced search feature. Data are presented with a focus on relations between genes and genomes: conservation of genes and gene families, speciation, chromosomal reorganization and synteny. The Génolevures site includes an area for specific studies by members of its international community. |
format | Text |
id | pubmed-1347522 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2006 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-13475222006-01-25 Génolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeasts Sherman, David Durrens, Pascal Iragne, Florian Beyne, Emmanuelle Nikolski, Macha Souciet, Jean-Luc Nucleic Acids Res Article The Génolevures online database () provides tools and data relative to 4 complete and 10 partial genome sequences determined and manually annotated by the Génolevures Consortium, to facilitate comparative genomic studies of hemiascomycetous yeasts. With their relatively small and compact genomes, yeasts offer a unique opportunity for exploring eukaryotic genome evolution. The new version of the Génolevures database provides truly complete (subtelomere to subtelomere) chromosome sequences, 25 000 protein-coding and tRNA genes, and in silico analyses for each gene element. A new feature of the database is a novel collection of conserved multi-species protein families and their mapping to metabolic pathways, coupled with an advanced search feature. Data are presented with a focus on relations between genes and genomes: conservation of genes and gene families, speciation, chromosomal reorganization and synteny. The Génolevures site includes an area for specific studies by members of its international community. Oxford University Press 2006-01-01 2005-12-28 /pmc/articles/PMC1347522/ /pubmed/16381905 http://dx.doi.org/10.1093/nar/gkj160 Text en © The Author 2006. Published by Oxford University Press. All rights reserved |
spellingShingle | Article Sherman, David Durrens, Pascal Iragne, Florian Beyne, Emmanuelle Nikolski, Macha Souciet, Jean-Luc Génolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeasts |
title | Génolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeasts |
title_full | Génolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeasts |
title_fullStr | Génolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeasts |
title_full_unstemmed | Génolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeasts |
title_short | Génolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeasts |
title_sort | génolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeasts |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347522/ https://www.ncbi.nlm.nih.gov/pubmed/16381905 http://dx.doi.org/10.1093/nar/gkj160 |
work_keys_str_mv | AT shermandavid genolevurescompletegenomesprovidedataandtoolsforcomparativegenomicsofhemiascomycetousyeasts AT durrenspascal genolevurescompletegenomesprovidedataandtoolsforcomparativegenomicsofhemiascomycetousyeasts AT iragneflorian genolevurescompletegenomesprovidedataandtoolsforcomparativegenomicsofhemiascomycetousyeasts AT beyneemmanuelle genolevurescompletegenomesprovidedataandtoolsforcomparativegenomicsofhemiascomycetousyeasts AT nikolskimacha genolevurescompletegenomesprovidedataandtoolsforcomparativegenomicsofhemiascomycetousyeasts AT soucietjeanluc genolevurescompletegenomesprovidedataandtoolsforcomparativegenomicsofhemiascomycetousyeasts |