Cargando…

Evaluation of methods for oligonucleotide array data via quantitative real-time PCR

BACKGROUND: There are currently many different methods for processing and summarizing probe-level data from Affymetrix oligonucleotide arrays. It is of great interest to validate these methods and identify those that are most effective. There is no single best way to do this validation, and a variet...

Descripción completa

Detalles Bibliográficos
Autores principales:	Qin, Li-Xuan, Beyer, Richard P, Hudson, Francesca N, Linford, Nancy J, Morris, Daryl E, Kerr, Kathleen F
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2006
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1360686/ https://www.ncbi.nlm.nih.gov/pubmed/16417622 http://dx.doi.org/10.1186/1471-2105-7-23

Ejemplares similares

External oligonucleotide standards enable cross laboratory comparison and exchange of real-time quantitative PCR data
por: Vermeulen, Joëlle, et al.
Publicado: (2009)

Quantitative Real-Time PCR
por: Sluijter, J. P. G., et al.
Publicado: (2006)

Guidelines for Optimisation of a Multiplex Oligonucleotide Ligation-PCR for Characterisation of Microbial Pathogens in a Microsphere Suspension Array
por: Wuyts, Véronique, et al.
Publicado: (2015)

Systematic Evaluation of Three microRNA Profiling Platforms: Microarray, Beads Array, and Quantitative Real-Time PCR Array
por: Wang, Bin, et al.
Publicado: (2011)

Gene expression levels assessed by oligonucleotide microarray analysis and quantitative real-time RT-PCR – how well do they correlate?
por: Dallas, Peter B, et al.
Publicado: (2005)

Real-time PCR quantitation of glucocorticoid receptor alpha isoform
por: Melo, Murilo R, et al.
Publicado: (2004)

Microarray validation: factors influencing correlation between oligonucleotide microarrays and real-time PCR
por: Morey, Jeanine S., et al.
Publicado: (2006)

Evaluation and Validation of a Real-Time PCR Assay for Detection and Quantitation of Human Adenovirus 14 from Clinical Samples
por: Metzgar, David, et al.
Publicado: (2009)

Synthetic oligonucleotides as quantitative PCR standards for quantifying microbial genes
por: Han, Xingguo, et al.
Publicado: (2023)

A comparison of oligonucleotide-based microarray and real-time PCR for the detection of sexually transmitted infections
por: Lee, Gyeong-In, et al.
Publicado: (2013)

Digital PCR dynamic range is approaching that of real-time quantitative PCR
por: Jones, Gerwyn M., et al.
Publicado: (2016)

A Real-Time PCR Array for Hierarchical Identification of Francisella Isolates
por: Svensson, Kerstin, et al.
Publicado: (2009)

Making standards for quantitative real-time pneumococcal PCR
por: Morpeth, Susan C., et al.
Publicado: (2014)

Clinical Applications of Quantitative Real-Time PCR in Virology
por: Engstrom-Melnyk, Julia, et al.
Publicado: (2015)

Development of real time PCR for detection and quantitation of Dengue Viruses
por: Gurukumar, KR, et al.
Publicado: (2009)

Detection of viral aerosols by use of real-time quantitative PCR
por: Wen, Zhanbo, et al.
Publicado: (2009)

Detection of Salmonella Typhi in Bile by Quantitative Real-Time PCR
por: Higginson, Ellen E., et al.
Publicado: (2022)

Improving the Sensitivity of Real-time PCR Detection of Group B Streptococcus Using Consensus Sequence-Derived Oligonucleotides
por: Khatami, Ameneh, et al.
Publicado: (2018)

Identification of reliable reference genes for quantitative real-time PCR normalization in pitaya
por: Chen, Canbin, et al.
Publicado: (2019)

Elucidating genetic diversity with oligonucleotide arrays
por: Kidgell, Claire, et al.
Publicado: (2005)

Gene array and real time PCR analysis of the adrenal sensitivity to adrenocorticotropic hormone in pig
por: Hazard, Dominique, et al.
Publicado: (2008)

Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays
por: Wang, Yulei, et al.
Publicado: (2006)

Universal detection of phytoplasmas and Xylella spp. by TaqMan singleplex and multiplex real-time PCR with dual priming oligonucleotides
por: Ito, Takao, et al.
Publicado: (2017)

HTqPCR: high-throughput analysis and visualization of quantitative real-time PCR data in R
por: Dvinge, Heidi, et al.
Publicado: (2009)

Validation of reference genes for quantitative real-time PCR (qPCR) analysis of Actinobacillus suis
por: Bujold, Adina R, et al.
Publicado: (2015)

Validation of Reference Genes for Real-Time Quantitative PCR (qPCR) Analysis of Avibacterium paragallinarum
por: Wen, Shuxiang, et al.
Publicado: (2016)

Methods to determine limit of detection and limit of quantification in quantitative real-time PCR (qPCR)
por: Forootan, Amin, et al.
Publicado: (2017)

Application of droplet digital PCR for quantitative detection of Spiroplasma citri in comparison with real time PCR
por: Maheshwari, Yogita, et al.
Publicado: (2017)

Comparison of Quantitative Real-Time PCR and Digital PCR to Detect the Polyomavirus in Merkel Cell Carcinoma
por: Barchitta, Martina, et al.
Publicado: (2022)

A multiplex oligonucleotide ligation-PCR as a complementary tool for subtyping of Salmonella Typhimurium
por: Wuyts, Véronique, et al.
Publicado: (2015)

Quantitative Detection of Schistosoma japonicum Cercariae in Water by Real-Time PCR
por: Hung, Yuen Wai, et al.
Publicado: (2008)

Quantitative biomarker analysis of synovial gene expression by real-time PCR
por: Boyle, David L, et al.
Publicado: (2003)

Comparison of Real-Time Quantitative PCR and Culture for the Diagnosis of Emerging Rickettsioses
por: Angelakis, Emmanouil, et al.
Publicado: (2012)

Estimating the number of integrations in transformed plants by quantitative real-time PCR
por: Mason, Giovanna, et al.
Publicado: (2002)

Conventional versus real‐time quantitative PCR for rare species detection
por: Xia, Zhiqiang, et al.
Publicado: (2018)

Quantitative real-time PCR for the measurement of feline cytokine mRNA
por: Leutenegger, Christian M, et al.
Publicado: (1999)

Identification of appropriate reference genes for human mesenchymal stem cell analysis by quantitative real-time PCR
por: Li, Xiuying, et al.
Publicado: (2014)

A real-time PCR-based method for determining the surface coverage of thiol-capped oligonucleotides bound onto gold nanoparticles
por: Kim, Eun-Young, et al.
Publicado: (2006)

Comparison of Real-Time PCR and Droplet Digital PCR for the Quantitative Detection of Lactiplantibacillus plantarum subsp. plantarum
por: Choi, Chang-Hun, et al.
Publicado: (2022)

High Throughput Gene Expression Measurement with Real Time PCR in a Microfluidic Dynamic Array
por: Spurgeon, Sandra L., et al.
Publicado: (2008)

Cannot write session to /tmp/vufind_sessions/sess_mnpkjne45l27pn1mbddqnpatik