Cargando…

OligoSpawn: a software tool for the design of overgo probes from large unigene datasets

BACKGROUND: Expressed sequence tag (EST) datasets represent perhaps the largest collection of genetic information. ESTs can be exploited in a variety of biological experiments and analysis. Here we are interested in the design of overlapping oligonucleotide (overgo) probes from large unigene (EST-co...

Descripción completa

Detalles Bibliográficos
Autores principales:	Zheng, Jie, Svensson, Jan T, Madishetty, Kavitha, Close, Timothy J, Jiang, Tao, Lonardi, Stefano
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2006
Materias:	Software
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1361790/ https://www.ncbi.nlm.nih.gov/pubmed/16401345 http://dx.doi.org/10.1186/1471-2105-7-7

Ejemplares similares

An improved method to identify BAC clones using pooled overgos
por: Madishetty, Kavitha, et al.
Publicado: (2007)

BFPTool: a software tool for analysis of Biomembrane Force Probe experiments
por: Šmít, Daniel, et al.
Publicado: (2017)

Uprobe 2008: an online resource for universal overgo hybridization-based probe retrieval and design(†)
por: Sullivan, Robert T., et al.
Publicado: (2008)

sigReannot: an oligo-set re-annotation pipeline based on similarities with the Ensembl transcripts and Unigene clusters
por: Casel, Pierrot, et al.
Publicado: (2009)

Strainer: software for analysis of population variation in community genomic datasets
por: Eppley, John M, et al.
Publicado: (2007)

Composition Profiler: a tool for discovery and visualization of amino acid composition differences
por: Vacic, Vladimir, et al.
Publicado: (2007)

Simulating metagenomic stable isotope probing datasets with MetaSIPSim
por: Barnett, Samuel E., et al.
Publicado: (2020)

Twitter integration of chemistry software tools
por: Yoshikawa, Naruki, et al.
Publicado: (2021)

PRISE2: Software for designing sequence-selective PCR primers and probes
por: Huang, Yu-Ting, et al.
Publicado: (2014)

GEVALT: An integrated software tool for genotype analysis
por: Davidovich, Ofir, et al.
Publicado: (2007)

Regulatory network operations in the Pathway Tools software
por: Paley, Suzanne M, et al.
Publicado: (2012)

rprimer: an R/bioconductor package for design of degenerate oligos for sequence variable viruses
por: Persson, Sofia, et al.
Publicado: (2022)

RAFTS(3)G: an efficient and versatile clustering software to analyses in large protein datasets
por: de Lima Nichio, Bruno Thiago, et al.
Publicado: (2019)

FUSIM: a software tool for simulating fusion transcripts
por: Bruno, Andrew E, et al.
Publicado: (2013)

Design and implementation of the mobility assessment tool: software description
por: Barnard, Ryan T, et al.
Publicado: (2013)

QRNAS: software tool for refinement of nucleic acid structures
por: Stasiewicz, Juliusz, et al.
Publicado: (2019)

Graphical representation of ribosomal RNA probe accessibility data using ARB software package
por: Kumar, Yadhu, et al.
Publicado: (2005)

Geoseq: a tool for dissecting deep-sequencing datasets
por: Gurtowski, James, et al.
Publicado: (2010)

The Systems Biology Research Tool: evolvable open-source software
por: Wright, Jeremiah, et al.
Publicado: (2008)

PentaPlot: A software tool for the illustration of genome mosaicism
por: Hamel, Lutz, et al.
Publicado: (2005)

ACUA: A software tool for automated codon usage analysis
por: Vetrivel, Umashankar, et al.
Publicado: (2007)

PAnalyzer: A software tool for protein inference in shotgun proteomics
por: Prieto, Gorka, et al.
Publicado: (2012)

BASE - 2nd generation software for microarray data management and analysis
por: Vallon-Christersson, Johan, et al.
Publicado: (2009)

Reference-agnostic representation and visualization of pan-genomes
por: Liang, Qihua, et al.
Publicado: (2021)

Development and evaluation of an open source software tool for deidentification of pathology reports
por: Beckwith, Bruce A, et al.
Publicado: (2006)

A software tool for creating simulated outbreaks to benchmark surveillance systems
por: Cassa, Christopher A, et al.
Publicado: (2005)

BMDExpress: a software tool for the benchmark dose analyses of genomic data
por: Yang, Longlong, et al.
Publicado: (2007)

GraphCrunch 2: Software tool for network modeling, alignment and clustering
por: Kuchaiev, Oleksii, et al.
Publicado: (2011)

GMFilter and SXTestPlate: software tools for improving the SNPlex™ genotyping system
por: Teuber, Markus, et al.
Publicado: (2009)

GOAL: A software tool for assessing biological significance of genes groups
por: Tchagang, Alain B, et al.
Publicado: (2010)

PyElph - a software tool for gel images analysis and phylogenetics
por: Pavel, Ana Brânduşa, et al.
Publicado: (2012)

BarWare: efficient software tools for barcoded single-cell genomics
por: Swanson, Elliott, et al.
Publicado: (2022)

Transcriptome Ortholog Alignment Sequence Tools (TOAST) for phylogenomic dataset assembly
por: Wcisel, Dustin J., et al.
Publicado: (2020)

S2O – A software tool for integrating research data from general purpose statistic software into electronic data capture systems
por: Bruland, Philipp, et al.
Publicado: (2017)

CoverageTool: A semi-automated graphic software: applications for plant phenotyping
por: Merchuk-Ovnat, Lianne, et al.
Publicado: (2019)

mEYEstro software: an automatic tool for standardized refractive surgery outcomes reporting
por: Gauvin, Mathieu, et al.
Publicado: (2023)

Treemmer: a tool to reduce large phylogenetic datasets with minimal loss of diversity
por: Menardo, Fabrizio, et al.
Publicado: (2018)

PROMO: an interactive tool for analyzing clinically-labeled multi-omic cancer datasets
por: Netanely, Dvir, et al.
Publicado: (2019)

Evaluation of sequence alignments and oligonucleotide probes with respect to three-dimensional structure of ribosomal RNA using ARB software package
por: Kumar, Yadhu, et al.
Publicado: (2006)

Intergenics: A tool for extraction of intergenicregions
por: Kurup, Kavitha, et al.
Publicado: (2010)

Cannot write session to /tmp/vufind_sessions/sess_fb1ofjb1ndil37r7l7eii0qq69