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Zebrafish transgenic Enhancer TRAP line database (ZETRAP)

BACKGROUND: The zebrafish, Danio rerio, is used as a model organism to study vertebrate genetics and development. An effective enhancer trap (ET) in zebrafish using the Tol2 transposon has been demonstrated. This approach could be used to study embryogenesis of a vertebrate species in real time and...

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Autores principales: Choo, Benjamin GH, Kondrichin, Igor, Parinov, Sergey, Emelyanov, Alexander, Go, William, Toh, Wei-chang, Korzh, Vladimir
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2006
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1386650/
https://www.ncbi.nlm.nih.gov/pubmed/16478534
http://dx.doi.org/10.1186/1471-213X-6-5
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author Choo, Benjamin GH
Kondrichin, Igor
Parinov, Sergey
Emelyanov, Alexander
Go, William
Toh, Wei-chang
Korzh, Vladimir
author_facet Choo, Benjamin GH
Kondrichin, Igor
Parinov, Sergey
Emelyanov, Alexander
Go, William
Toh, Wei-chang
Korzh, Vladimir
author_sort Choo, Benjamin GH
collection PubMed
description BACKGROUND: The zebrafish, Danio rerio, is used as a model organism to study vertebrate genetics and development. An effective enhancer trap (ET) in zebrafish using the Tol2 transposon has been demonstrated. This approach could be used to study embryogenesis of a vertebrate species in real time and with high resolution. DESCRIPTION: The information gathered during the course of systematic investigation of many ET transgenic lines have been collected and compiled in the form of an online database – the Zebrafish Enhancer TRAP lines database (ZETRAP). CONCLUSION: ZETRAP is a web-based system that provides data and information to the scientific community about the developmental, genetic and genomic aspects of transgenic zebrafish lines obtained using Tol2 transposon-mediated transgenesis. The current version (version 1.0) contains description of 27 ET lines that express EGFP in various organs and tissues, for example, heart, brain, notochord, gut, etc. It also includes information on insertion sites of the Tol2 transposon in these lines.
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spelling pubmed-13866502006-03-02 Zebrafish transgenic Enhancer TRAP line database (ZETRAP) Choo, Benjamin GH Kondrichin, Igor Parinov, Sergey Emelyanov, Alexander Go, William Toh, Wei-chang Korzh, Vladimir BMC Dev Biol Database BACKGROUND: The zebrafish, Danio rerio, is used as a model organism to study vertebrate genetics and development. An effective enhancer trap (ET) in zebrafish using the Tol2 transposon has been demonstrated. This approach could be used to study embryogenesis of a vertebrate species in real time and with high resolution. DESCRIPTION: The information gathered during the course of systematic investigation of many ET transgenic lines have been collected and compiled in the form of an online database – the Zebrafish Enhancer TRAP lines database (ZETRAP). CONCLUSION: ZETRAP is a web-based system that provides data and information to the scientific community about the developmental, genetic and genomic aspects of transgenic zebrafish lines obtained using Tol2 transposon-mediated transgenesis. The current version (version 1.0) contains description of 27 ET lines that express EGFP in various organs and tissues, for example, heart, brain, notochord, gut, etc. It also includes information on insertion sites of the Tol2 transposon in these lines. BioMed Central 2006-02-14 /pmc/articles/PMC1386650/ /pubmed/16478534 http://dx.doi.org/10.1186/1471-213X-6-5 Text en Copyright © 2006 Choo et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database
Choo, Benjamin GH
Kondrichin, Igor
Parinov, Sergey
Emelyanov, Alexander
Go, William
Toh, Wei-chang
Korzh, Vladimir
Zebrafish transgenic Enhancer TRAP line database (ZETRAP)
title Zebrafish transgenic Enhancer TRAP line database (ZETRAP)
title_full Zebrafish transgenic Enhancer TRAP line database (ZETRAP)
title_fullStr Zebrafish transgenic Enhancer TRAP line database (ZETRAP)
title_full_unstemmed Zebrafish transgenic Enhancer TRAP line database (ZETRAP)
title_short Zebrafish transgenic Enhancer TRAP line database (ZETRAP)
title_sort zebrafish transgenic enhancer trap line database (zetrap)
topic Database
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1386650/
https://www.ncbi.nlm.nih.gov/pubmed/16478534
http://dx.doi.org/10.1186/1471-213X-6-5
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